Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 0.0e+00 1132.1 613 100.0
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.1e-225 786.9 642 70.9
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 4.0e-196 688.7 613 66.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.8e-159 567.0 637 56.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.4e-153 547.4 627 56.8
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 7.8e-99 365.5 646 42.7
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 6.0e-91 339.3 655 38.9
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 3.0e-90 337.0 652 41.1
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 4.3e-89 333.2 669 40.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.6e-88 331.3 657 40.3
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 4.7e-88 329.7 661 40.8
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.2e-88 329.3 645 41.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-87 328.2 553 42.7
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.8e-87 327.8 642 41.0
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-87 326.6 573 43.5
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 2.6e-86 323.9 640 40.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.5e-86 322.4 646 40.6
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 8.3e-85 318.9 618 41.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-84 317.8 626 39.5
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.1e-84 316.6 631 38.5
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.3e-82 310.8 613 38.2
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.9e-82 310.1 634 38.3
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 6.6e-82 309.3 610 40.7
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.3e-81 307.0 617 40.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 7.3e-81 305.8 683 37.0
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.8e-80 303.9 581 40.4
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.8e-79 301.2 607 38.7
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.1e-79 300.4 357 52.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 6.8e-79 299.3 699 36.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.9e-79 298.9 634 38.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 8.9e-79 298.9 594 39.6
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.2e-78 298.5 614 39.7
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.2e-78 298.5 617 39.9
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.5e-78 298.1 664 36.6
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.5e-78 298.1 618 37.2
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.4e-78 296.6 621 38.6
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 4.4e-78 296.6 701 37.2
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.8e-78 296.2 643 37.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.3e-77 295.0 618 39.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.3e-77 295.0 645 37.5
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.2e-77 294.3 635 38.1
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.2e-77 294.3 574 39.9
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.9e-77 293.9 543 40.7
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.8e-77 293.5 699 38.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.9e-77 293.1 617 38.2
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 4.9e-77 293.1 531 41.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.4e-77 292.7 693 36.8
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.4e-76 290.8 604 39.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.2e-76 290.4 615 38.5
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 9.2e-76 288.9 356 53.7
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.1e-75 287.7 606 37.8
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.7e-75 287.3 294 58.2
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.5e-75 287.0 574 38.9
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 6.0e-75 286.2 579 40.1
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 7.8e-75 285.8 684 38.7
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-74 285.4 602 39.7
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.3e-74 285.0 710 35.5
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.3e-74 285.0 609 36.3
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.0e-74 283.9 642 37.2
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 5.1e-74 283.1 645 35.8
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.6e-74 282.3 602 36.0
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.1e-73 282.0 653 36.6
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.5e-73 280.8 639 36.5
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.1e-72 277.7 608 36.0
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.7e-72 276.6 610 37.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 8.1e-72 275.8 539 38.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.1e-72 275.8 587 39.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 8.1e-72 275.8 341 54.3
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.1e-71 275.4 577 37.4
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.4e-71 274.2 618 39.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.2e-71 273.1 620 37.1
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.4e-70 270.4 558 39.1
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 5.8e-70 269.6 612 35.8
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 7.6e-70 269.2 595 37.5
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.3e-69 268.5 313 53.0
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.7e-69 268.1 615 35.6
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.9e-69 267.3 631 36.0
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 8.4e-69 265.8 313 52.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 8.4e-69 265.8 313 52.4
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.1e-68 265.4 617 38.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-68 265.4 313 52.4
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.4e-68 264.2 608 36.5
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.2e-67 261.9 714 35.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.6e-67 261.5 613 36.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.6e-67 260.0 300 53.3
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.3e-66 257.7 348 48.9
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 5.1e-66 256.5 573 38.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 6.6e-66 256.1 514 39.9
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 4.3e-65 253.4 348 49.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.3e-65 253.4 645 34.7
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 5.6e-65 253.1 369 46.1
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.3e-65 252.7 636 35.4
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 9.6e-65 252.3 614 35.2
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.1e-64 251.1 604 36.1
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.4e-63 248.4 630 35.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.9e-63 246.1 556 37.4
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.0e-62 244.6 619 34.2
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.0e-62 244.6 288 53.1
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 3.4e-62 243.8 622 34.4
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 5.8e-62 243.0 614 35.0
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.2e-61 241.1 593 33.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.9e-61 240.7 610 34.6
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.9e-61 240.7 637 33.6
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.8e-61 240.4 650 33.4
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.9e-61 240.0 630 34.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.4e-60 238.4 592 34.5
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-60 238.4 259 55.6
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-59 235.3 537 37.1
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 7.9e-59 232.6 313 48.2
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 7.9e-59 232.6 606 35.0
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.0e-58 230.7 625 34.4
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.1e-58 229.9 270 53.7
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.1e-57 228.8 546 35.0
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.1e-56 224.6 682 30.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.4e-55 221.1 582 34.4
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 4.5e-54 216.9 612 32.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.5e-54 216.9 596 33.6
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.7e-53 214.9 599 31.9
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.7e-53 214.9 591 33.5
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.9e-53 214.2 597 31.5
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.9e-53 213.4 221 57.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.9e-53 213.4 221 57.5
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.9e-52 211.5 598 32.6
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-51 208.0 289 49.5
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.6e-51 206.8 237 54.9
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.6e-51 206.8 510 35.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 7.9e-51 206.1 237 54.4
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 3.0e-50 204.1 556 33.1
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.9e-50 203.8 570 32.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 4.3e-49 200.3 476 34.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 4.8e-48 196.8 511 32.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 3.2e-44 184.1 553 30.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 8.7e-42 176.0 567 32.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 5.7e-41 173.3 275 42.2
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.8e-39 168.3 196 54.1
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.9e-39 166.4 451 34.1
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.3e-37 162.2 445 32.1
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.2e-37 161.4 287 36.2
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.0e-37 160.2 311 40.8
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.0e-34 151.0 214 44.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-34 150.6 239 44.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.3e-33 147.5 228 41.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 6.3e-32 143.3 521 30.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.8e-29 134.0 422 30.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 8.5e-29 132.9 235 34.0
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.5e-28 131.3 264 34.8
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.4e-26 125.6 193 46.6
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.9e-26 124.0 121 62.0
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 8.2e-24 116.3 547 27.1
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.3e-23 113.6 190 41.6
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 9.1e-23 112.8 205 35.1
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.4e-22 110.9 187 39.0
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.2e-20 104.4 123 52.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.6e-19 102.1 235 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.3e-16 92.4 509 23.0
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.3e-16 92.4 82 64.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 9.1e-15 86.3 224 33.9
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 5.0e-13 80.5 152 37.5
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-12 79.0 198 33.3
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.5e-12 78.2 72 61.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.2e-12 77.8 91 50.5
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 6.1e-11 73.6 69 56.5
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.0e-10 71.2 111 41.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.7e-10 70.1 115 43.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 4.4e-09 67.4 175 35.4
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.7e-09 66.2 119 42.0
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 2.8e-08 64.7 76 53.9
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.8e-08 63.9 74 48.6
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 4.8e-08 63.9 317 26.5
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.8e-07 62.0 127 33.1
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.1e-07 61.2 97 46.4
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 9.1e-07 59.7 209 27.8
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 7.7e-06 56.6 71 52.1


User provided reference genes

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