Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 3.2e-107 391.7 196 100.0
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 2.8e-95 352.1 193 89.1
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.8e-94 349.4 191 91.6
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 3.1e-94 348.6 195 89.7
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 6.2e-74 281.2 197 71.6
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 8.9e-73 277.3 191 70.2
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 3.4e-72 275.4 197 69.0
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 3.4e-72 275.4 196 70.9
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 7.5e-72 274.2 191 69.1
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 7.5e-72 274.2 198 69.7
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 9.8e-72 273.9 200 69.5
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 9.8e-72 273.9 196 68.9
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.3e-71 273.5 191 69.1
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 1.3e-71 273.5 198 70.2
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.2e-71 272.7 192 69.8
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 2.2e-71 272.7 193 71.5
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 2.2e-71 272.7 193 73.1
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 3.7e-71 271.9 190 71.6
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 4.9e-71 271.6 194 71.1
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.1e-70 270.4 193 73.1
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.1e-70 270.4 195 72.8
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 1.4e-70 270.0 192 72.9
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 4.1e-70 268.5 193 67.9
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 7.0e-70 267.7 194 69.6
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.6e-69 266.5 192 71.9
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.6e-69 266.5 192 68.2
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 2.1e-69 266.2 194 71.1
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 3.5e-69 265.4 200 67.0
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 3.5e-69 265.4 200 67.0
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 4.6e-69 265.0 193 69.9
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 4.6e-69 265.0 193 68.9
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 4.6e-69 265.0 199 67.3
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 7.8e-69 264.2 185 74.1
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 1.0e-68 263.8 193 70.5
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 1.0e-68 263.8 191 69.6
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.3e-68 263.5 195 68.2
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.7e-68 263.1 193 68.4
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 1.7e-68 263.1 200 67.0
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 2.3e-68 262.7 191 71.7
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 3.9e-68 261.9 191 67.5
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 6.6e-68 261.2 194 67.0
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.1e-67 260.4 192 68.8
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.9e-67 259.6 195 65.6
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.9e-67 259.6 195 65.6
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 1.9e-67 259.6 196 68.4
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.5e-67 259.2 194 69.6
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 2.5e-67 259.2 195 65.6
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 2.5e-67 259.2 195 65.6
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 3.3e-67 258.8 197 68.0
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 3.3e-67 258.8 197 68.0
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 3.3e-67 258.8 200 66.0
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 4.3e-67 258.5 195 65.6
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.6e-67 258.1 195 65.6
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 7.3e-67 257.7 195 66.2
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.2e-66 256.9 195 64.6
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 3.6e-66 255.4 193 68.4
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 8.1e-66 254.2 194 67.5
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.4e-65 253.4 228 62.3
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.4e-65 253.4 195 67.7
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 1.4e-65 253.4 193 67.4
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 1.8e-65 253.1 193 68.9
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.3e-65 252.7 191 64.4
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 4.0e-65 251.9 195 64.1
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 4.0e-65 251.9 195 63.6
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 5.2e-65 251.5 186 69.9
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 8.9e-65 250.8 193 65.3
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 1.2e-64 250.4 195 63.1
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.5e-64 250.0 195 63.1
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.5e-64 250.0 197 64.5
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 2.0e-64 249.6 195 64.1
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 4.4e-64 248.4 204 62.7
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 7.5e-64 247.7 190 66.8
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 7.5e-64 247.7 192 64.1
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 1.3e-63 246.9 197 66.5
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 1.3e-63 246.9 195 62.1
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.7e-63 245.4 198 65.7
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.1e-62 243.8 195 62.6
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 5.4e-62 241.5 193 64.2
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 1.6e-61 240.0 191 64.4
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.5e-61 238.8 196 64.3
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 3.5e-61 238.8 195 64.1
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 3.5e-61 238.8 195 64.1
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 3.5e-61 238.8 238 56.7
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 4.6e-61 238.4 191 63.4
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 4.6e-61 238.4 196 64.3
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.3e-60 236.1 196 64.3
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 3.0e-60 235.7 192 62.5
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 3.9e-60 235.3 197 60.9
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 8.6e-60 234.2 197 60.4
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.6e-60 234.2 181 63.0
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 1.5e-59 233.4 191 61.8
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 6.4e-55 218.0 191 59.7
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 4.2e-54 215.3 191 59.2
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.2e-53 213.8 183 62.8
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 3.5e-53 212.2 156 68.6
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 7.8e-53 211.1 193 58.0
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.3e-52 209.5 282 46.5
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 3.9e-52 208.8 193 58.0
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 3.9e-52 208.8 186 60.8
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 8.7e-52 207.6 190 55.8
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 2.5e-51 206.1 193 57.0
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 2.1e-50 203.0 195 54.9
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 4.7e-50 201.8 190 53.2
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 6.2e-50 201.4 183 59.0
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 5.3e-49 198.4 184 56.5
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.5e-43 179.5 152 58.6
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.3e-36 157.1 184 48.9
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 2.3e-36 156.4 188 46.8
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 9.3e-30 134.4 117 61.5
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.1e-29 133.3 114 64.0
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 4.8e-26 122.1 183 38.8
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 4.0e-25 119.0 114 53.5
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 5.7e-19 98.6 120 49.2
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 5.3e-17 92.0 54 75.9
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.1e-13 80.1 77 51.9
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 7.9e-13 78.2 183 32.2
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.0e-11 73.6 46 69.6
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 1.4e-09 67.4 38 81.6
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 1.3e-07 60.8 59 61.0


User provided reference genes

Program Settings