Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 1.6e-68 262.7 135 100.0
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 1.7e-46 189.5 135 79.3
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 8.3e-46 187.2 135 77.8
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 7.8e-36 154.1 137 59.1
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 1.3e-35 153.3 134 61.2
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 3.3e-34 148.7 135 59.3
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 3.6e-33 145.2 134 59.0
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 4.7e-33 144.8 136 59.6
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 2.0e-31 139.4 137 55.5
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 4.4e-31 138.3 136 58.1
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 7.6e-31 137.5 139 56.1
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 1.3e-30 136.7 134 56.7
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 6.4e-30 134.4 137 55.5
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 1.4e-29 133.3 134 56.0
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 1.9e-29 132.9 137 51.1
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 5.4e-29 131.3 134 50.0
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 9.3e-29 130.6 135 52.6
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 1.2e-28 130.2 137 50.4
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 6.0e-28 127.9 131 53.4
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 7.8e-28 127.5 137 50.4
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 1.0e-27 127.1 131 52.7
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 1.3e-27 126.7 65 93.8
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 1.7e-27 126.3 137 49.6
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 2.3e-27 125.9 134 54.5
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 2.3e-27 125.9 136 51.5
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 3.0e-27 125.6 134 54.5
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 5.1e-27 124.8 137 50.4
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 6.6e-27 124.4 134 54.5
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 1.1e-26 123.6 114 59.6
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 1.5e-26 123.2 137 52.6
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 3.3e-26 122.1 134 53.0
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 5.6e-26 121.3 137 51.8
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 2.1e-25 119.4 133 50.4
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 2.1e-25 119.4 121 56.2
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 3.6e-25 118.6 137 51.1
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 6.2e-25 117.9 135 51.1
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 6.2e-25 117.9 134 52.2
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 8.1e-25 117.5 134 52.2
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 1.8e-24 116.3 134 51.5
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 1.8e-24 116.3 134 53.0
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 3.1e-24 115.5 137 49.6
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 4.0e-24 115.2 134 51.5
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 5.3e-24 114.8 137 51.8
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 5.3e-24 114.8 137 51.8
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 1.5e-23 113.2 139 47.5
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 2.6e-23 112.5 131 47.3
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 3.4e-23 112.1 139 48.9
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 9.9e-23 110.5 135 48.1
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 3.8e-22 108.6 132 47.7
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 4.9e-22 108.2 136 46.3
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 6.4e-22 107.8 133 49.6
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 6.4e-22 107.8 135 47.4
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 1.4e-21 106.7 137 46.0
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 4.2e-21 105.1 134 43.3
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 5.4e-21 104.8 133 46.6
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 7.1e-21 104.4 133 45.9
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 9.3e-21 104.0 133 47.4
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 1.2e-20 103.6 132 48.5
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 1.2e-20 103.6 137 43.8
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 6.0e-20 101.3 133 46.6
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.0e-19 100.5 133 45.9
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 1.8e-19 99.8 133 45.1
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 2.3e-19 99.4 129 41.9
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 3.3e-18 95.5 130 43.8
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 4.3e-18 95.1 138 43.5
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 2.1e-17 92.8 80 60.0
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 4.8e-17 91.7 62 66.1
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 4.8e-17 91.7 135 46.7
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 1.1e-16 90.5 133 46.6
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 1.1e-16 90.5 65 64.6
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 2.4e-16 89.4 135 40.0
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 3.1e-16 89.0 113 46.9
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 3.1e-16 89.0 66 62.1
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 4.0e-16 88.6 133 41.4
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 2.6e-15 85.9 130 40.0
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 1.7e-14 83.2 54 64.8
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 2.9e-14 82.4 135 37.8
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 2.9e-14 82.4 62 61.3
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 3.8e-14 82.0 56 58.9
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 6.4e-14 81.3 154 34.4
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 5.5e-13 78.2 61 55.7
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 3.0e-11 72.4 61 49.2
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 6.7e-11 71.2 125 35.2
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 4.3e-10 68.6 122 33.6
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 5.6e-10 68.2 116 37.9
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.3e-09 67.0 64 51.6
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 2.1e-09 66.2 125 34.4
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 8.2e-09 64.3 101 36.6
AUR62033103 Chenopodium quinoa HOM05D007613 ORTHO05D009344 1.4e-08 63.5 135 33.3
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 5.8e-07 58.2 155 31.0
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 3.8e-06 55.5 48 58.3


User provided reference genes

Program Settings