Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 2.3e-111 405.6 211 100.0
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.3e-93 346.7 212 87.3
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.2e-80 303.5 210 80.0
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 2.8e-80 302.4 179 89.9
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 1.3e-53 213.8 190 62.1
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 1.6e-51 206.8 211 57.8
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 3.9e-50 202.2 212 57.1
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 1.9e-49 199.9 190 59.5
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.9e-49 199.9 212 56.6
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 3.3e-49 199.1 189 60.3
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 5.7e-49 198.4 136 75.7
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 7.4e-49 198.0 194 59.8
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 9.6e-49 197.6 209 56.0
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 1.3e-48 197.2 191 58.6
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 3.7e-48 195.7 210 55.7
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 6.2e-48 194.9 188 57.4
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 1.1e-47 194.1 214 53.7
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 1.4e-47 193.7 190 58.4
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.4e-47 193.7 208 54.8
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 1.8e-47 193.4 195 57.4
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.8e-47 193.4 192 58.9
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 3.1e-47 192.6 201 56.7
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 5.3e-47 191.8 109 84.4
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 5.3e-47 191.8 221 52.9
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 6.9e-47 191.4 144 69.4
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 9.0e-47 191.0 183 60.7
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 1.2e-46 190.7 195 56.4
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 1.5e-46 190.3 111 82.9
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.5e-46 190.3 183 57.4
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 1.5e-46 190.3 189 57.1
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 1.5e-46 190.3 119 82.4
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 1.5e-46 190.3 134 73.9
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 2.0e-46 189.9 154 66.2
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.6e-46 189.5 189 56.6
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 2.6e-46 189.5 159 66.0
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 5.8e-46 188.3 209 56.9
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 5.8e-46 188.3 166 62.0
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 5.8e-46 188.3 166 62.0
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 5.8e-46 188.3 177 61.0
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 7.6e-46 188.0 154 65.6
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.0e-45 187.6 208 53.8
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 1.3e-45 187.2 148 68.2
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 1.3e-45 187.2 152 65.8
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 1.3e-45 187.2 145 68.3
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.7e-45 186.8 116 82.8
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 2.2e-45 186.4 177 60.5
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 2.9e-45 186.0 150 67.3
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 3.8e-45 185.7 106 87.7
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 5.0e-45 185.3 106 85.8
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 5.0e-45 185.3 105 88.6
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 6.5e-45 184.9 104 88.5
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 8.4e-45 184.5 143 68.5
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 8.4e-45 184.5 188 56.9
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 8.4e-45 184.5 110 83.6
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.1e-44 184.1 107 85.0
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.1e-44 184.1 209 55.5
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.1e-44 184.1 117 78.6
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.1e-44 184.1 117 78.6
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.4e-44 183.7 125 72.8
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.4e-44 183.7 136 69.9
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 1.9e-44 183.3 102 87.3
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.9e-44 183.3 116 76.7
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.9e-44 183.3 127 71.7
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 2.5e-44 183.0 112 81.2
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 3.2e-44 182.6 114 78.9
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 4.2e-44 182.2 173 59.0
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 4.2e-44 182.2 212 50.0
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 4.2e-44 182.2 127 74.8
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 4.2e-44 182.2 186 56.5
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 1.2e-43 180.6 175 59.4
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.2e-43 180.6 112 79.5
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.2e-43 180.6 144 67.4
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 1.2e-43 180.6 211 55.5
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 2.1e-43 179.9 117 77.8
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 2.1e-43 179.9 109 81.7
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 2.1e-43 179.9 109 80.7
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 2.1e-43 179.9 109 80.7
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 2.1e-43 179.9 109 80.7
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 2.1e-43 179.9 109 80.7
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 4.6e-43 178.7 117 76.1
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 4.6e-43 178.7 127 70.9
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 6.1e-43 178.3 176 56.8
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 6.1e-43 178.3 176 56.8
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 6.1e-43 178.3 105 81.9
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 7.9e-43 177.9 105 81.0
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.3e-42 177.2 104 82.7
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 1.3e-42 177.2 143 67.1
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 2.3e-42 176.4 102 85.3
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 3.9e-42 175.6 101 86.1
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 5.1e-42 175.3 100 87.0
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.9e-41 173.3 213 50.7
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.9e-41 173.3 108 77.8
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.5e-41 172.9 107 76.6
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 4.3e-41 172.2 191 55.0
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 4.3e-41 172.2 108 75.9
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 5.7e-41 171.8 142 64.1
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 7.4e-41 171.4 108 75.9
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 2.8e-40 169.5 195 50.8
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 5.3e-39 165.2 101 81.2
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.0e-38 163.3 111 73.0
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 3.8e-37 159.1 101 77.2
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 1.4e-34 150.6 132 60.6
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 1.8e-34 150.2 103 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 5.1e-34 148.7 109 67.0
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 2.5e-33 146.4 125 60.8
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 1.4e-31 140.6 85 81.2
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 1.2e-27 127.5 138 50.7
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 1.2e-27 127.5 70 85.7
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 2.1e-27 126.7 74 83.8
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 1.5e-25 120.6 63 92.1
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 4.2e-20 102.4 63 85.7
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 5.5e-20 102.1 186 38.2
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 8.0e-19 98.2 55 87.3
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 2.2e-16 90.1 44 90.9
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 4.8e-16 89.0 77 54.5
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 6.1e-11 72.0 44 72.7
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.8e-10 70.5 53 62.3
BcaC02g10904 Brassica carinata HOM05D006938 ORTHO05D008600 7.7e-06 55.1 43 65.1


User provided reference genes

Program Settings