Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 2.7e-132 475.3 239 100.0
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 3.5e-103 378.6 245 81.6
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 2.1e-100 369.4 251 78.9
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 6.5e-86 321.2 239 71.1
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 2.8e-52 209.5 246 50.4
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 1.2e-50 204.1 252 49.6
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 1.5e-50 203.8 240 52.5
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 6.4e-49 198.4 247 49.0
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 1.1e-48 197.6 247 50.2
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 2.1e-47 193.4 249 47.8
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 3.5e-47 192.6 217 51.6
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 6.0e-47 191.8 246 49.6
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 7.8e-47 191.4 256 46.5
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 1.3e-46 190.7 247 47.8
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 3.0e-46 189.5 282 42.2
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 6.6e-46 188.3 248 47.6
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 1.9e-45 186.8 246 48.0
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 4.3e-45 185.7 246 48.4
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 4.3e-45 185.7 246 48.0
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 4.3e-45 185.7 247 47.8
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 4.7e-44 182.2 241 45.6
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 8.1e-44 181.4 247 46.2
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 8.1e-44 181.4 260 46.2
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 8.1e-44 181.4 247 44.9
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 1.1e-43 181.0 250 47.2
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 1.1e-43 181.0 252 46.8
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 1.8e-43 180.3 247 47.0
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 3.1e-43 179.5 241 46.9
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 3.1e-43 179.5 237 46.4
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 4.0e-43 179.1 238 46.6
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 9.0e-43 177.9 275 45.5
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 1.5e-42 177.2 246 48.0
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.0e-42 176.8 151 60.3
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 4.4e-42 175.6 244 45.5
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 5.8e-42 175.3 211 47.4
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 7.6e-42 174.9 248 45.2
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 9.9e-42 174.5 220 47.7
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 9.9e-42 174.5 243 45.3
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.3e-41 174.1 242 45.9
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.3e-41 174.1 242 45.9
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 1.7e-41 173.7 244 46.3
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 2.2e-41 173.3 251 45.0
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.2e-41 173.3 248 45.2
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 2.2e-41 173.3 248 45.2
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 8.4e-41 171.4 257 43.2
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 1.1e-40 171.0 256 42.6
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 3.2e-40 169.5 223 46.2
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 5.4e-40 168.7 241 46.1
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 7.1e-40 168.3 257 42.8
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 7.1e-40 168.3 245 45.3
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 7.1e-40 168.3 254 42.5
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 9.3e-40 167.9 247 46.6
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.2e-39 167.5 252 44.0
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.6e-39 167.2 260 42.7
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 1.6e-39 167.2 259 42.9
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 2.1e-39 166.8 247 45.3
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 3.5e-39 166.0 252 43.7
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.0e-38 164.5 251 44.6
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 1.3e-38 164.1 272 43.4
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 2.3e-38 163.3 255 43.9
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 3.9e-38 162.5 228 44.7
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 5.1e-38 162.2 256 42.6
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 6.6e-38 161.8 224 46.9
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 6.6e-38 161.8 194 51.0
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 1.5e-37 160.6 247 42.9
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 4.3e-37 159.1 257 42.0
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 7.3e-37 158.3 253 44.7
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.5e-34 150.6 147 57.1
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 2.6e-34 149.8 158 53.2
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 3.4e-34 149.4 212 46.2
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 5.4e-32 142.1 216 43.1
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 4.6e-31 139.0 195 45.1
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 2.3e-30 136.7 243 39.1
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.5e-29 134.0 146 54.1
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 5.6e-29 132.1 273 36.3
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 1.1e-27 127.9 245 37.6
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 3.1e-27 126.3 152 46.7
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 4.5e-26 122.5 141 47.5
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 2.2e-25 120.2 270 35.6
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 5.5e-24 115.5 240 37.1
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 1.2e-23 114.4 274 35.8
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 7.9e-23 111.7 243 34.2
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.1e-19 101.3 115 47.0
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 1.3e-17 94.4 80 60.0
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 1.0e-14 84.7 101 49.5
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 1.1e-11 74.7 101 43.6
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 5.3e-11 72.4 69 59.4
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 5.3e-11 72.4 89 46.1
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 2.6e-10 70.1 132 36.4
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.4e-08 64.3 58 60.3
ATR0693G104 Amborella trichopoda HOM05D007766 ORTHO05D009733 8.8e-06 55.1 95 34.7


User provided reference genes

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