Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G005280 Citrullus lanatus HOM05D007468 ORTHO05D009051 9.2e-88 327.0 184 100.0
CsaV3_7G029790 Cucumis sativus L. HOM05D007468 ORTHO05D009051 4.3e-61 238.4 184 71.7
MELO3C015942.2 Cucumis melo HOM05D007468 ORTHO05D009051 2.8e-52 209.1 186 67.7
Sed0000824 Sechium edule HOM05D007468 ORTHO05D009051 2.5e-40 169.5 185 57.3
PSO761G0006 Papaver somniferum HOM05D007468 ORTHO05D009051 1.3e-20 104.0 178 45.5
QL12p028937 Quercus lobata HOM05D007468 ORTHO05D009051 1.3e-20 104.0 183 42.1
CANSAT25G0675 Cannabis sativa HOM05D007468 ORTHO05D009051 1.7e-20 103.6 189 40.7
Atru.chr5.1053 Acer truncatum HOM05D007468 ORTHO05D009051 3.7e-20 102.4 179 42.5
TWI36G1516 Tripterygium wilfordii HOM05D007468 ORTHO05D009051 4.8e-20 102.1 191 40.8
TAR362G1257 Trochodendron aralioides HOM05D007468 ORTHO05D009051 1.8e-19 100.1 151 44.4
FAN04G2054 Fragaria x ananassa HOM05D007468 ORTHO05D009051 3.1e-19 99.4 168 46.4
FvH4_5g39630 Fragaria vesca HOM05D007468 ORTHO05D009051 4.1e-19 99.0 168 44.6
FAN08G3013 Fragaria x ananassa HOM05D007468 ORTHO05D009051 4.1e-19 99.0 168 44.6
FAN18G4106 Fragaria x ananassa HOM05D007468 ORTHO05D009051 4.1e-19 99.0 168 44.6
Duzib138G0571 Durio zibethinus HOM05D007468 ORTHO05D009051 5.3e-19 98.6 189 38.6
Nn3g21627 Nelumbo nucifera HOM05D007468 ORTHO05D009051 5.3e-19 98.6 184 39.1
Gohir.D07G131600 Gossypium hirsutum HOM05D007468 ORTHO05D009051 9.1e-19 97.8 173 41.0
Nitab4.5_0004002g0010 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.2e-18 97.4 174 43.7
Phvul.007G216300 Phaseolus vulgaris HOM05D007468 ORTHO05D009051 1.2e-18 97.4 180 40.0
Gorai.001G142900 Gossypium raimondii HOM05D007468 ORTHO05D009051 1.5e-18 97.1 173 41.0
Nitab4.5_0000116g0050 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.5e-18 97.1 193 42.0
Peaxi162Scf00001g00282 Petunia axillaris HOM05D007468 ORTHO05D009051 1.5e-18 97.1 170 42.4
PSO210G3413 Papaver somniferum HOM05D007468 ORTHO05D009051 7.7e-18 94.7 174 42.5
Thecc.01G309900 Theobroma cacao HOM05D007468 ORTHO05D009051 7.7e-18 94.7 176 39.2
Gohir.A07G127300 Gossypium hirsutum HOM05D007468 ORTHO05D009051 1.0e-17 94.4 166 41.6
RcHm_v2.0_Chr7g0241941 Rosa chinensis HOM05D007468 ORTHO05D009051 1.3e-17 94.0 160 45.6
Lj1C20T8 Lonicera japonica HOM05D007468 ORTHO05D009051 5.0e-17 92.0 175 40.6
Oeu008452.1 Olea europaea HOM05D007468 ORTHO05D009051 5.0e-17 92.0 155 43.9
Glyma.10G015100 Glycine max HOM05D007468 ORTHO05D009051 6.5e-17 91.7 170 40.0
Sed0007650 Sechium edule HOM05D007468 ORTHO05D009051 1.1e-16 90.9 194 36.6
Aqoxy2G02809 Aquilegia oxysepala HOM05D007468 ORTHO05D009051 1.4e-16 90.5 180 41.1
Glyma.02G014400 Glycine max HOM05D007468 ORTHO05D009051 1.4e-16 90.5 188 37.8
Rhsim01G0289100 Rhododendron simsii HOM05D007468 ORTHO05D009051 1.4e-16 90.5 184 37.0
Cpa.g.sc18.3 Carica papaya HOM05D007468 ORTHO05D009051 2.5e-16 89.7 177 42.9
Oeu008450.1 Olea europaea HOM05D007468 ORTHO05D009051 2.5e-16 89.7 155 43.9
Psat3g020640 Pisum sativum HOM05D007468 ORTHO05D009051 2.5e-16 89.7 188 39.4
MELO3C017927.2 Cucumis melo HOM05D007468 ORTHO05D009051 4.2e-16 89.0 171 45.6
CsaV3_4G001100 Cucumis sativus L. HOM05D007468 ORTHO05D009051 5.5e-16 88.6 175 49.7
TAR365G0390 Trochodendron aralioides HOM05D007468 ORTHO05D009051 5.5e-16 88.6 166 40.4
Lalb_Chr21g0309461 Lupinus albus HOM05D007468 ORTHO05D009051 7.2e-16 88.2 175 38.3
Ca_09200_v3 Cicer arietinum L. HOM05D007468 ORTHO05D009051 9.4e-16 87.8 197 35.5
Eucgr.H01069 Eucalyptus grandis HOM05D007468 ORTHO05D009051 9.4e-16 87.8 179 35.8
Prupe.8G269500 Prunus persica HOM05D007468 ORTHO05D009051 9.4e-16 87.8 167 41.9
PGR044G1291 Punica granatum HOM05D007468 ORTHO05D009051 9.4e-16 87.8 206 35.9
PGSC0003DMG400031830 Solanum tuberosum HOM05D007468 ORTHO05D009051 9.4e-16 87.8 181 39.2
CAN.G668.23 Capsicum annuum HOM05D007468 ORTHO05D009051 1.2e-15 87.4 197 41.1
ClCG10G011220 Citrullus lanatus HOM05D007468 ORTHO05D009051 1.2e-15 87.4 135 40.0
Duzib133G0259 Durio zibethinus HOM05D007468 ORTHO05D009051 2.7e-15 86.3 171 33.9
Cfa005843 Carpinus fangiana HOM05D007468 ORTHO05D009051 6.1e-15 85.1 166 36.7
Solyc09g075660.3 Solanum lycopersicum HOM05D007468 ORTHO05D009051 6.1e-15 85.1 173 39.9
Sopen09g030460 Solanum pennellii HOM05D007468 ORTHO05D009051 7.9e-15 84.7 173 39.9
Psat5g096000 Pisum sativum HOM05D007468 ORTHO05D009051 1.4e-14 84.0 193 37.8
TPR.G20290 Trifolium pratense HOM05D007468 ORTHO05D009051 1.8e-14 83.6 214 35.0
Glyma.19G214800 Glycine max HOM05D007468 ORTHO05D009051 3.9e-14 82.4 181 35.9
Manes.01G225500 Manihot esculenta HOM05D007468 ORTHO05D009051 3.9e-14 82.4 170 37.1
Medtr7g109300 Medicago truncatula HOM05D007468 ORTHO05D009051 3.9e-14 82.4 247 30.0
VMungo0720G2271 Vigna mungo HOM05D007468 ORTHO05D009051 6.7e-14 81.6 184 35.9
Haze_05007 Corylus avellana HOM05D007468 ORTHO05D009051 8.8e-14 81.3 167 37.7
Psat6g163440 Pisum sativum HOM05D007468 ORTHO05D009051 1.5e-13 80.5 158 38.0
Phvul.001G211600 Phaseolus vulgaris HOM05D007468 ORTHO05D009051 2.0e-13 80.1 191 35.1
Sabra14G0091900 Salix brachista HOM05D007468 ORTHO05D009051 2.0e-13 80.1 163 37.4
SHI19828 Sapria himalayana HOM05D007468 ORTHO05D009051 2.0e-13 80.1 164 36.6
Haze_05006 Corylus avellana HOM05D007468 ORTHO05D009051 7.4e-13 78.2 171 37.4
Glyma.03G218100 Glycine max HOM05D007468 ORTHO05D009051 7.4e-13 78.2 193 36.3
Sc05g0000570 Simmondsia chinensis HOM05D007468 ORTHO05D009051 7.4e-13 78.2 190 37.4
Nitab4.5_0008750g0010 Nicotiana tabacum HOM05D007468 ORTHO05D009051 9.7e-13 77.8 184 39.1
Ca_10302_v3 Cicer arietinum L. HOM05D007468 ORTHO05D009051 1.3e-12 77.4 155 40.0
Nitab4.5_0002828g0030 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.3e-12 77.4 216 36.6
CAN.G1209.19 Capsicum annuum HOM05D007468 ORTHO05D009051 1.7e-12 77.0 192 34.4
Cc08_g11840 Coffea canephora HOM05D007468 ORTHO05D009051 2.2e-12 76.6 136 44.9
Ciclev10024491m.g Citrus clementina HOM05D007468 ORTHO05D009051 3.7e-12 75.9 173 38.7
Thhalv10009861m.g Eutrema salsugineum HOM05D010095 ORTHO05D012148 4.8e-12 75.5 168 35.7
Lj5g0007724 Lotus japonicus HOM05D007468 ORTHO05D009051 6.3e-12 75.1 185 34.6
A09p01600 Brassica napus HOM05D010095 ORTHO05D012148 1.8e-11 73.6 166 36.1
C09p01700 Brassica napus HOM05D010095 ORTHO05D012148 4.1e-11 72.4 168 35.7
BolC9t53104H Brassica oleracea HOM05D010095 ORTHO05D012148 4.1e-11 72.4 168 35.7
BcaB03g15797 Brassica carinata HOM05D010095 ORTHO05D012148 5.3e-11 72.0 173 35.8
Lalb_Chr15g0078361 Lupinus albus HOM05D007468 ORTHO05D009051 5.3e-11 72.0 195 32.3
BraA09t35818Z Brassica rapa HOM05D010095 ORTHO05D012148 7.0e-11 71.6 167 35.3
AT4G02160 Arabidopsis thaliana HOM05D010095 ORTHO05D012148 9.1e-11 71.2 162 34.0
BcaB01g02075 Brassica carinata HOM05D010095 ORTHO05D012148 4.5e-10 68.9 171 34.5
CDE08G0146 Ceratophyllum demersum HOM05D007468 ORTHO05D009051 4.5e-10 68.9 180 31.7
C05p01370 Brassica napus HOM05D010095 ORTHO05D012148 5.9e-10 68.6 175 33.7
BolC5t28919H Brassica oleracea HOM05D010095 ORTHO05D012148 7.7e-10 68.2 176 33.5
PSO357G0021 Papaver somniferum HOM05D007468 ORTHO05D009051 7.7e-10 68.2 180 34.4
Potri.014G123500 Populus trichocarpa HOM05D007468 ORTHO05D009051 1.0e-09 67.8 168 35.7
CiPaw.07G114800 Carya illinoinensis HOM05D007468 ORTHO05D009051 1.3e-09 67.4 173 37.0
BcaC04g24041 Brassica carinata HOM05D010095 ORTHO05D012148 2.2e-09 66.6 179 33.0
Actinidia27604 Actinidia chinensis HOM05D007468 ORTHO05D009051 3.8e-09 65.9 164 33.5
DCAR_002873 Daucus carota HOM05D007468 ORTHO05D009051 3.8e-09 65.9 207 30.0
Sopen06g035970 Solanum pennellii HOM05D007468 ORTHO05D009051 3.8e-09 65.9 188 36.2
SGA_v2.0_scaffold334G49050 Striga asiatica HOM05D007468 ORTHO05D009051 3.8e-09 65.9 194 32.5
AT5G61710 Arabidopsis thaliana HOM05D010095 ORTHO05D012148 5.0e-09 65.5 162 34.6
CiPaw.08G091800 Carya illinoinensis HOM05D007468 ORTHO05D009051 6.5e-09 65.1 182 33.5
Medtr1g087720 Medicago truncatula HOM05D007468 ORTHO05D009051 8.5e-09 64.7 229 28.4
PSO170G3554 Papaver somniferum HOM05D007468 ORTHO05D009051 1.5e-08 63.9 162 33.3
A10p01390 Brassica napus HOM05D010095 ORTHO05D012148 1.9e-08 63.5 175 32.6
AL6G51000 Arabidopsis lyrata HOM05D010095 ORTHO05D012148 2.5e-08 63.2 166 34.3
Lj1g0017695 Lotus japonicus HOM05D007468 ORTHO05D009051 2.5e-08 63.2 165 37.0
Peaxi162Scf00140g01310 Petunia axillaris HOM05D007468 ORTHO05D009051 2.5e-08 63.2 207 30.4
Potri.002G199100 Populus trichocarpa HOM05D007468 ORTHO05D009051 3.2e-08 62.8 174 33.3
MBI18_g24947_MAGBIO Magnolia biondii HOM05D007468 ORTHO05D009051 9.4e-08 61.2 169 31.4
TPR.G19783 Trifolium pratense HOM05D007468 ORTHO05D009051 9.4e-08 61.2 204 30.4
Actinidia21419 Actinidia chinensis HOM05D007468 ORTHO05D009051 1.2e-07 60.8 166 31.3
DCAR_005774 Daucus carota HOM05D007468 ORTHO05D009051 2.1e-07 60.1 160 30.6
Gorai.008G141500 Gossypium raimondii HOM05D041120 ORTHO05D009051 2.7e-07 59.7 189 33.3
Lalb_Chr08g0237891 Lupinus albus HOM05D007468 ORTHO05D009051 3.6e-07 59.3 217 29.0
Gohir.D12G130200 Gossypium hirsutum HOM05D041120 ORTHO05D009051 6.1e-07 58.5 189 33.3
MBI19_g29995_MAGBIO Magnolia biondii HOM05D007468 ORTHO05D009051 8.0e-07 58.2 188 29.8
CARHR250340 Cardamine hirsuta HOM05D010095 ORTHO05D012148 1.8e-06 57.0 168 30.4
Gohir.A12G126800 Gossypium hirsutum HOM05D041120 ORTHO05D009051 3.0e-06 56.2 186 31.2
Aa31LG1G9880 Aethionema arabicum HOM05D010095 ORTHO05D012148 4.0e-06 55.8 67 49.3
ATR0730G063 Amborella trichopoda HOM05D045150 ORTHO05D009051 5.2e-06 55.5 177 33.3
Dinv10066 Davidia involucrata HOM05D007468 ORTHO05D009051 5.2e-06 55.5 84 46.4
ATR0706G066 Amborella trichopoda HOM05D045150 ORTHO05D009051 6.7e-06 55.1 180 34.4
Migut.D00103 Erythranthe guttata HOM05D007468 ORTHO05D009051 6.7e-06 55.1 212 35.8
Nn4g25660 Nelumbo nucifera HOM05D007468 ORTHO05D009051 6.7e-06 55.1 54 59.3


User provided reference genes

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