Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.9e-114 415.2 205 100.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.6e-88 328.2 237 75.1
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 9.9e-83 310.5 237 72.6
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.2e-80 303.5 237 69.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 4.8e-77 291.6 237 66.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.4e-52 210.3 231 52.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.1e-49 200.7 219 52.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.4e-49 200.3 237 50.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.9e-49 199.9 234 53.8
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.5e-49 199.5 227 52.0
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.5e-49 199.5 217 53.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 5.5e-49 198.4 211 54.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 3.6e-48 195.7 233 49.8
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.6e-48 195.7 233 51.1
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.6e-48 195.3 233 50.6
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.3e-47 193.0 207 54.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 3.0e-47 192.6 233 48.9
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.1e-47 191.8 225 52.4
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.6e-46 189.5 228 49.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 9.7e-46 187.6 230 49.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 9.7e-46 187.6 224 50.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.3e-45 187.2 228 48.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.3e-45 187.2 230 50.0
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-45 186.8 216 50.5
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.8e-45 185.3 236 47.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 6.3e-45 184.9 166 59.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.4e-44 183.7 163 59.5
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-44 183.7 234 48.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.8e-44 183.3 231 48.1
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 5.3e-44 181.8 220 49.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.3e-44 181.8 178 56.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 6.9e-44 181.4 211 52.1
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 9.1e-44 181.0 236 46.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 9.1e-44 181.0 181 55.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.6e-43 179.5 177 55.4
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.4e-43 179.1 185 53.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 5.9e-43 178.3 227 47.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.0e-42 177.6 236 44.9
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.0e-42 177.6 177 54.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.3e-42 177.2 161 57.1
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-42 176.8 156 60.3
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.2e-42 176.4 234 48.7
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.9e-42 176.0 227 48.9
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.9e-42 176.0 177 54.8
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 3.8e-42 175.6 162 56.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.0e-42 175.3 238 45.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.0e-42 175.3 231 45.5
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.0e-42 175.3 177 54.2
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.5e-42 174.9 231 45.0
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 6.5e-42 174.9 231 46.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 8.5e-42 174.5 196 51.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.4e-41 173.7 163 55.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.9e-41 173.3 161 57.8
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.9e-41 173.3 223 47.1
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 5.5e-41 171.8 239 46.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.4e-41 171.0 176 52.3
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.2e-40 170.6 181 54.1
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.1e-40 169.9 202 48.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-40 169.5 221 49.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.7e-40 169.5 176 52.8
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-39 167.5 188 52.7
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.0e-39 167.5 202 50.0
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-39 166.0 240 47.5
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.5e-38 163.7 161 54.0
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.5e-38 163.7 214 49.5
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.6e-38 162.9 200 50.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.4e-38 162.2 269 40.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.4e-38 162.2 239 44.8
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.7e-38 161.8 142 59.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 5.7e-38 161.8 173 53.8
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-37 160.6 203 47.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.3e-37 160.6 195 47.7
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-37 160.2 240 44.2
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 3.7e-37 159.1 199 44.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.7e-37 159.1 141 58.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.8e-37 158.7 173 51.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.8e-37 158.7 210 48.6
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 4.8e-37 158.7 159 53.5
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.3e-37 158.3 241 43.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.3e-37 158.3 268 39.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 8.2e-37 157.9 176 50.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-36 157.1 199 48.7
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.4e-36 156.4 225 46.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 4.1e-36 155.6 190 48.4
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-35 154.1 137 57.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-35 153.7 175 50.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.6e-35 153.7 169 52.1
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.5e-34 148.3 175 49.1
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 8.5e-34 147.9 195 47.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.1e-33 147.5 207 44.9
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.5e-33 147.1 174 51.1
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 7.2e-33 144.8 128 59.4
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.7e-32 142.1 213 43.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.3e-31 139.8 173 47.4
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.3e-31 139.8 173 47.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.0e-31 139.4 245 38.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.2e-31 138.7 245 40.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.2e-31 138.7 230 42.2
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.7e-31 138.3 163 47.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 8.8e-31 137.9 269 37.5
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.5e-30 137.1 188 44.1
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.0e-30 136.7 169 45.6
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.4e-30 135.6 158 45.6
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.4e-30 135.6 162 43.8
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.5e-30 134.8 239 39.3
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 9.7e-30 134.4 158 44.9
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 9.7e-30 134.4 160 45.6
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.8e-29 132.1 219 37.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 3.1e-28 129.4 163 45.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.0e-28 128.3 193 45.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 9.1e-28 127.9 210 40.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.1e-28 127.9 156 43.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.6e-27 127.1 162 42.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.0e-27 126.7 191 40.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.7e-27 126.3 131 51.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.7e-27 126.3 170 44.1
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.7e-27 126.3 156 42.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.5e-27 125.6 216 39.4
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.0e-26 124.4 139 44.6
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.3e-26 124.0 163 46.0
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-26 123.6 137 51.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-26 123.2 156 42.3
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-26 123.2 165 41.8
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 5.0e-26 122.1 77 76.6
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-25 120.9 156 41.7
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-25 120.9 156 41.7
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.5e-25 120.6 78 73.1
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-25 120.2 136 44.9
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-25 120.2 136 44.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-25 120.2 164 44.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 7.2e-25 118.2 136 44.1
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 7.2e-25 118.2 136 44.1
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.7e-24 116.3 137 43.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 8.8e-23 111.3 137 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.6e-22 109.8 137 40.1
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 4.4e-22 109.0 250 35.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.8e-21 106.3 143 35.0
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.4e-20 104.0 149 45.0
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 7.0e-20 101.7 113 46.0
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 9.1e-20 101.3 163 39.3
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.9e-19 98.6 166 42.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 8.6e-18 94.7 124 38.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 7.2e-17 91.7 165 40.6
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.6e-16 89.4 93 52.7
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 3.6e-16 89.4 57 77.2
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 8.0e-16 88.2 108 48.1
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.0e-15 86.3 91 53.8
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 5.7e-14 82.0 142 34.5
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 7.5e-14 81.6 98 48.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.7e-13 79.3 91 45.1
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.9e-13 79.0 91 44.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 4.9e-13 79.0 142 31.7
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 6.3e-13 78.6 119 42.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 8.3e-13 78.2 55 65.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 4.1e-12 75.9 56 62.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 7.0e-12 75.1 140 32.1
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.2e-12 74.7 102 42.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.6e-11 73.9 142 38.0
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.0e-11 73.6 77 50.6
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.1e-09 67.8 71 50.7
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-08 62.0 138 34.8
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 5.2e-07 58.9 112 37.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 5.2e-07 58.9 32 75.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 8.9e-07 58.2 126 34.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-06 57.4 88 37.5
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-06 57.0 53 49.1


User provided reference genes

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