Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 1.5e-65 252.7 126 100.0
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 6.2e-35 151.0 126 66.7
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 9.9e-33 143.7 140 60.7
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 3.7e-32 141.7 130 62.3
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 1.8e-26 122.9 120 55.8
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 5.2e-26 121.3 123 52.8
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 6.8e-26 120.9 125 53.6
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 1.5e-25 119.8 124 54.8
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 2.0e-25 119.4 123 54.5
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 2.0e-25 119.4 123 54.5
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 2.0e-25 119.4 123 53.7
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 3.4e-25 118.6 123 55.3
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 3.4e-25 118.6 123 54.5
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 3.4e-25 118.6 126 54.0
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 5.8e-25 117.9 124 55.6
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 7.6e-25 117.5 116 54.3
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 7.6e-25 117.5 116 54.3
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 1.7e-24 116.3 124 53.2
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 1.7e-24 116.3 124 55.6
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 2.2e-24 115.9 123 52.0
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 2.2e-24 115.9 125 53.6
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 2.2e-24 115.9 125 52.8
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 2.9e-24 115.5 117 53.8
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 2.9e-24 115.5 125 53.6
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 4.9e-24 114.8 120 51.7
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 4.9e-24 114.8 123 52.8
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 4.9e-24 114.8 123 52.8
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 4.9e-24 114.8 120 51.7
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 4.9e-24 114.8 120 51.7
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 4.9e-24 114.8 120 51.7
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 4.9e-24 114.8 119 53.8
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 4.9e-24 114.8 116 54.3
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 6.4e-24 114.4 123 51.2
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 6.4e-24 114.4 123 52.0
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 6.4e-24 114.4 119 52.9
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 6.4e-24 114.4 120 51.7
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 1.4e-23 113.2 123 50.4
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 1.9e-23 112.8 123 50.4
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 2.4e-23 112.5 113 54.0
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 3.2e-23 112.1 112 54.5
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 3.2e-23 112.1 125 52.8
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 4.2e-23 111.7 123 50.4
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 4.2e-23 111.7 124 50.8
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 4.2e-23 111.7 124 52.4
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 5.4e-23 111.3 116 52.6
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 7.1e-23 110.9 112 54.5
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 7.1e-23 110.9 123 52.0
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 7.1e-23 110.9 119 52.9
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 1.6e-22 109.8 112 53.6
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 1.6e-22 109.8 116 51.7
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 2.7e-22 109.0 125 48.0
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 3.5e-22 108.6 123 49.6
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 6.0e-22 107.8 112 56.2
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 6.0e-22 107.8 123 49.6
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 6.0e-22 107.8 118 50.8
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 7.8e-22 107.5 126 51.6
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 1.3e-21 106.7 124 50.8
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 1.7e-21 106.3 124 49.2
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 2.3e-21 105.9 123 49.6
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 3.0e-21 105.5 118 50.0
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 3.9e-21 105.1 123 50.4
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 3.9e-21 105.1 125 50.4
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 1.9e-20 102.8 117 47.9
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 1.9e-20 102.8 117 47.9
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 1.9e-20 102.8 117 47.9
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 1.9e-20 102.8 117 50.4
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 2.5e-20 102.4 117 48.7
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 3.3e-20 102.1 117 48.7
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 3.3e-20 102.1 115 50.4
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 5.6e-20 101.3 124 47.6
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 7.3e-20 100.9 117 47.0
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 7.3e-20 100.9 117 47.0
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 7.3e-20 100.9 124 47.6
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 1.6e-19 99.8 112 50.9
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 1.6e-19 99.8 124 47.6
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 2.1e-19 99.4 117 49.6
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 2.8e-19 99.0 123 47.2
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 2.8e-19 99.0 126 46.0
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 2.8e-19 99.0 114 50.0
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 3.6e-19 98.6 125 46.4
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 3.6e-19 98.6 117 48.7
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 4.8e-19 98.2 121 47.1
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 4.8e-19 98.2 114 50.0
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 8.1e-19 97.4 117 46.2
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 8.1e-19 97.4 117 46.2
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 1.1e-18 97.1 117 46.2
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 1.1e-18 97.1 124 46.8
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 1.8e-18 96.3 124 48.4
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 1.5e-17 93.2 113 46.0
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 2.6e-17 92.4 124 43.5
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 7.6e-17 90.9 126 44.4
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 9.9e-17 90.5 112 49.1
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 1.4e-15 86.7 155 40.0
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 1.4e-15 86.7 155 40.0
Dinv09304 Davidia involucrata HOM05D007133 ORTHO05D008954 4.2e-15 85.1 60 70.0
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 1.6e-14 83.2 126 45.2
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 2.1e-14 82.8 106 45.3
Medtr4g101060 Medicago truncatula HOM05D007133 ORTHO05D008954 2.5e-12 75.9 94 45.7
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 1.3e-11 73.6 188 33.0
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 1.8e-10 69.7 93 44.1
AagrBONN_evm.TU.Sc2ySwM_344.2738 Anthoceros agrestis HOM05D007133 ORTHO05D008954 4.0e-10 68.6 116 39.7
HPP92_001020 Vanilla planifolia HOM05D007133 ORTHO05D008954 4.0e-10 68.6 56 57.1
Mapoly0049s0103 Marchantia polymorpha HOM05D007133 ORTHO05D008954 1.2e-09 67.0 114 39.5
Pp3c9_17680 Physcomitrium patens HOM05D007133 ORTHO05D008954 1.2e-09 67.0 114 40.4
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 1.5e-09 66.6 90 46.7
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 3.8e-08 62.0 83 43.4
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 8.4e-08 60.8 83 43.4
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 2.4e-07 59.3 84 42.9
Rhsim01G0126100 Rhododendron simsii HOM05D007133 ORTHO05D008954 2.1e-06 56.2 42 69.0
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 2.7e-06 55.8 83 41.0
Cc00_g26940 Coffea canephora HOM05D007133 ORTHO05D008954 7.9e-06 54.3 89 41.6


User provided reference genes

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