Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 2.6e-55 218.4 105 100.0
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 1.2e-47 193.0 105 86.7
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 2.0e-47 192.2 105 86.7
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 5.5e-37 157.5 105 72.4
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.5e-29 132.1 103 53.4
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 3.2e-29 131.7 103 55.3
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 4.2e-29 131.3 103 53.4
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.6e-28 129.4 103 53.4
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.1e-28 129.0 87 64.4
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.7e-28 128.6 103 56.3
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.0e-27 126.7 99 54.5
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 1.8e-27 125.9 97 57.7
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.8e-27 125.9 100 53.0
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 1.8e-27 125.9 103 54.4
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 2.3e-27 125.6 92 58.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 8.8e-27 123.6 103 52.4
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 8.8e-27 123.6 103 52.4
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.1e-26 123.2 103 50.5
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.5e-26 122.9 99 53.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.5e-26 122.9 99 53.5
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 2.0e-26 122.5 103 54.4
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 2.0e-26 122.5 95 56.8
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.6e-26 122.1 99 53.5
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 2.6e-26 122.1 98 54.1
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 3.3e-26 121.7 103 50.5
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 3.3e-26 121.7 103 51.5
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.3e-26 121.7 97 52.6
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 4.4e-26 121.3 103 50.5
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 4.4e-26 121.3 96 54.2
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 5.7e-26 120.9 98 55.1
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 5.7e-26 120.9 98 55.1
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 5.7e-26 120.9 103 51.5
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 5.7e-26 120.9 85 60.0
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 5.7e-26 120.9 97 54.6
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 7.5e-26 120.6 99 52.5
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 7.5e-26 120.6 105 51.4
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 7.5e-26 120.6 103 50.5
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.7e-25 119.4 96 54.2
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 1.7e-25 119.4 97 52.6
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 2.8e-25 118.6 102 52.0
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 2.8e-25 118.6 103 49.5
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 3.7e-25 118.2 99 50.5
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 4.8e-25 117.9 97 48.5
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 6.3e-25 117.5 103 49.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.2e-25 117.1 101 52.5
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 8.2e-25 117.1 98 50.0
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 1.1e-24 116.7 105 50.5
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 1.4e-24 116.3 99 51.5
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 3.1e-24 115.2 103 49.5
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 3.1e-24 115.2 97 51.5
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 4.1e-24 114.8 103 48.5
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 5.3e-24 114.4 105 51.4
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 5.3e-24 114.4 100 51.0
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 7.0e-24 114.0 97 51.5
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 1.2e-23 113.2 103 47.6
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 1.2e-23 113.2 95 49.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-23 112.8 91 56.0
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.6e-23 112.8 103 48.5
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.6e-23 112.8 98 51.0
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 2.0e-23 112.5 74 59.5
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 4.5e-23 111.3 96 50.0
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 5.9e-23 110.9 79 59.5
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 7.7e-23 110.5 96 50.0
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 7.7e-23 110.5 103 51.5
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 7.7e-23 110.5 95 50.5
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 1.0e-22 110.2 104 47.1
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.0e-22 110.2 96 51.0
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 1.7e-22 109.4 96 50.0
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 2.2e-22 109.0 74 58.1
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 2.2e-22 109.0 79 55.7
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 5.0e-22 107.8 93 51.6
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 5.0e-22 107.8 93 54.8
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 6.5e-22 107.5 97 45.4
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 8.5e-22 107.1 82 53.7
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 8.5e-22 107.1 106 47.2
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.9e-21 105.9 74 56.8
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.9e-21 105.9 90 51.1
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.2e-21 104.8 74 56.8
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 4.2e-21 104.8 74 56.8
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 4.2e-21 104.8 74 56.8
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 4.2e-21 104.8 74 56.8
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 4.2e-21 104.8 76 56.6
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 5.5e-21 104.4 74 56.8
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 7.2e-21 104.0 74 55.4
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 9.4e-21 103.6 74 56.8
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 9.4e-21 103.6 92 47.8
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 9.4e-21 103.6 92 47.8
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-20 103.2 74 56.8
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-20 103.2 74 56.8
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-20 103.2 74 56.8
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 1.2e-20 103.2 74 56.8
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 1.2e-20 103.2 74 56.8
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 2.1e-20 102.4 74 55.4
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 2.1e-20 102.4 74 55.4
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 2.1e-20 102.4 74 55.4
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 3.6e-20 101.7 74 55.4
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 3.6e-20 101.7 103 45.6
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 3.6e-20 101.7 97 47.4
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 4.7e-20 101.3 98 45.9
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 56.8
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 56.8
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-20 100.5 92 46.7
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 56.8
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 8.0e-20 100.5 92 46.7
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 8.0e-20 100.5 74 55.4
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.4e-19 99.8 104 44.2
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 6.8e-19 97.4 78 53.8
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 1.5e-18 96.3 82 48.8
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 9.8e-18 93.6 83 51.8
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 6.3e-17 90.9 59 64.4
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 1.1e-16 90.1 100 39.0
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 1.1e-16 90.1 100 39.0
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 1.8e-16 89.4 74 47.3
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 1.8e-16 89.4 100 39.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 1.8e-16 89.4 100 39.0
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 3.1e-16 88.6 74 48.6
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 5.4e-16 87.8 89 48.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.4e-16 87.8 89 48.3
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.9e-13 79.3 78 44.9
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 1.8e-11 72.8 96 36.5
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.1e-08 63.5 93 34.4
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 1.1e-08 63.5 63 42.9
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 62.8 93 34.4
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 1.8e-08 62.8 59 54.2
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.1e-08 62.0 105 34.3
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 4.1e-08 61.6 93 34.4
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.6e-07 59.7 93 33.3
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 87 35.6
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.7e-07 58.9 58 44.8
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 5.9e-07 57.8 67 46.3
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 5.9e-07 57.8 58 43.1
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 7.7e-07 57.4 98 34.7
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 7.7e-07 57.4 103 35.0
Sopen03g040720 Solanum pennellii HOM05D001848 ORTHO05D001295 7.7e-07 57.4 58 43.1
PGSC0003DMG400002487 Solanum tuberosum HOM05D001848 ORTHO05D001295 7.7e-07 57.4 58 43.1
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 1.0e-06 57.0 62 41.9
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 1.0e-06 57.0 61 41.0
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-06 56.6 59 44.1
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 73 37.0
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 1.7e-06 56.2 62 40.3
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 1.7e-06 56.2 59 50.8
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 2.3e-06 55.8 92 32.6
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.9e-06 55.5 105 33.3
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 2.9e-06 55.5 88 34.1
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 3.8e-06 55.1 93 36.6
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 5.0e-06 54.7 62 41.9
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 5.0e-06 54.7 93 33.3
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 5.0e-06 54.7 93 34.4
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 6.6e-06 54.3 92 34.8
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.6e-06 54.3 104 33.7
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 8.6e-06 53.9 88 33.0
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 8.6e-06 53.9 107 35.5


User provided reference genes

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