Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 5.6e-198 694.1 357 100.0
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.3e-166 588.6 361 85.9
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 4.0e-156 555.1 351 84.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.6e-144 516.5 360 76.7
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 6.1e-96 355.1 364 57.4
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.2e-95 352.1 364 57.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.0e-88 328.2 372 52.7
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.8e-82 309.3 378 51.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.5e-81 304.7 363 51.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.7e-80 302.4 374 50.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.2e-79 298.9 373 50.1
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.2e-79 298.9 379 48.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 6.8e-79 298.5 367 50.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.0e-78 297.0 365 48.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 4.4e-78 295.8 372 47.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.9e-77 293.1 403 45.2
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-77 293.1 379 48.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 8.3e-77 291.6 357 50.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.4e-76 290.0 378 49.7
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.4e-76 290.0 378 49.7
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 4.1e-76 289.3 405 45.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 7.0e-76 288.5 359 47.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 9.2e-76 288.1 371 48.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.6e-75 287.3 374 47.9
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 7.8e-75 285.0 396 46.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.0e-74 284.6 374 47.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-74 283.9 407 47.7
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 8.6e-74 281.6 381 49.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.1e-73 281.2 371 48.2
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.9e-73 280.4 377 46.4
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 9.5e-73 278.1 374 49.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.8e-72 276.6 415 44.3
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.8e-71 273.9 385 48.1
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-70 271.2 401 44.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.6e-70 270.0 378 47.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.6e-70 270.0 425 43.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.6e-70 270.0 377 45.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.4e-70 269.2 411 43.8
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.4e-70 269.2 414 43.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 9.8e-70 268.1 332 50.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.7e-69 266.2 373 47.7
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 6.4e-69 265.4 404 44.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 8.3e-69 265.0 377 45.6
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-68 264.2 377 45.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.0e-68 261.9 386 44.8
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.0e-67 260.4 373 46.4
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.5e-67 259.6 394 43.4
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.3e-66 257.7 389 44.5
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.7e-66 257.3 383 45.4
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.6e-66 255.4 404 43.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.5e-65 253.4 381 45.9
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.5e-65 253.4 389 45.8
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.3e-65 253.1 380 43.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.3e-65 253.1 380 43.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.3e-65 251.9 403 42.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 7.3e-65 251.9 390 45.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.2e-64 251.1 372 44.4
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.8e-64 250.0 382 44.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.8e-63 247.3 376 41.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.1e-63 246.5 416 42.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-62 244.6 398 39.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.0e-62 243.8 388 45.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.6e-62 243.4 404 42.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.1e-59 233.8 366 42.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 3.5e-59 233.0 264 53.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.5e-59 233.0 387 40.6
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.0e-59 232.3 367 44.1
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.8e-59 231.9 386 40.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.3e-58 231.1 370 42.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.7e-58 230.7 394 41.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.0e-58 229.9 388 39.9
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-57 228.0 318 46.5
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.3e-57 226.1 413 38.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.6e-57 225.7 390 40.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.6e-57 225.7 387 40.3
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 9.5e-57 224.9 366 43.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.5e-57 224.9 375 41.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.6e-56 223.0 388 41.0
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.4e-55 221.1 335 41.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.8e-55 220.7 393 40.2
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.1e-55 219.9 417 39.1
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 3.4e-54 216.5 395 40.3
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.7e-53 214.2 392 39.3
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.9e-53 213.4 389 41.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 6.4e-53 212.2 382 39.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 6.4e-53 212.2 387 39.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.9e-52 210.7 323 44.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.4e-52 210.3 373 40.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.2e-52 209.9 368 39.4
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 4.1e-52 209.5 389 40.4
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.1e-52 209.5 365 41.1
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 5.4e-52 209.1 395 38.5
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.4e-52 209.1 365 39.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.4e-52 209.1 365 39.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 9.2e-52 208.4 392 39.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 9.2e-52 208.4 388 38.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-51 207.2 388 40.2
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.1e-51 207.2 388 40.2
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 3.5e-51 206.5 388 40.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 3.5e-51 206.5 387 39.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.5e-51 206.5 316 44.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.0e-50 204.9 387 38.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.6e-50 202.2 258 45.7
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-48 198.0 257 50.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.1e-48 197.2 403 39.5
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.8e-46 189.1 403 38.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.3e-45 188.0 376 39.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.8e-45 186.4 403 38.2
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.8e-45 186.4 316 39.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 4.9e-45 186.0 400 37.5
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.3e-42 177.9 281 43.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.0e-39 166.4 374 35.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 9.9e-38 161.8 404 35.4
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 7.1e-36 155.6 394 31.0
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.6e-35 154.5 411 34.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 6.0e-35 152.5 411 34.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.9e-33 147.5 188 47.9
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 7.4e-33 145.6 188 48.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.3e-32 144.8 236 44.1
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-31 141.4 235 43.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.3e-31 139.4 254 38.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.0e-31 138.7 233 40.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.2e-30 138.3 222 41.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 5.8e-30 136.0 360 30.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-29 134.8 213 40.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.2e-29 134.0 248 38.3
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.4e-28 131.3 199 40.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.4e-28 131.3 393 31.0
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.4e-28 130.6 241 38.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.1e-28 129.0 220 38.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-27 128.3 216 40.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.1e-27 127.5 371 32.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.1e-27 127.5 226 37.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.5e-27 126.7 230 43.9
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.0e-27 125.9 228 34.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 7.9e-27 125.6 229 38.9
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.3e-26 124.8 415 33.0
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-26 124.4 205 39.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-25 121.7 262 35.5
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.5e-25 121.3 405 32.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.5e-25 120.6 244 36.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.3e-25 119.8 337 33.5
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.3e-25 119.8 226 35.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 4.8e-24 116.3 343 32.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.1e-23 115.2 186 39.8
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-23 115.2 236 33.9
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.4e-23 114.0 236 39.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.3e-23 112.8 259 34.4
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.5e-22 111.3 201 40.3
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 4.5e-22 109.8 234 38.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-21 108.2 230 35.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.7e-21 107.8 248 35.5
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.9e-21 106.3 252 33.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 3.2e-20 103.6 191 37.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.1e-19 100.9 251 31.9
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.9e-15 85.9 130 40.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 9.0e-15 85.5 144 42.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.0e-15 85.5 143 35.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 9.0e-15 85.5 143 35.0
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.5e-14 84.7 197 32.5
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.7e-13 81.3 51 64.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.2e-13 80.9 143 35.7
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.8e-13 80.1 238 29.4
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 5.5e-12 76.3 47 66.0
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.2e-12 75.9 151 37.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.6e-11 73.6 379 25.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.3e-10 71.6 218 30.3
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.3e-09 66.6 126 39.7
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.2e-06 58.5 119 36.1
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.5e-06 56.6 176 29.5


User provided reference genes

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