Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 0.0e+00 1550.8 827 100.0
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 0.0e+00 1185.2 879 76.0
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 0.0e+00 1140.2 860 75.1
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 4.3e-310 1067.8 844 71.0
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 5.5e-140 502.7 849 41.7
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 5.5e-140 502.7 828 42.6
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.3e-133 481.5 844 41.8
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.2e-131 474.9 836 42.1
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.0e-130 471.9 855 41.2
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 4.4e-129 466.5 855 40.9
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.2e-128 462.2 861 40.9
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 8.2e-128 462.2 849 40.9
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.2e-126 458.4 865 40.1
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.5e-126 456.8 852 40.8
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.0e-122 445.3 884 39.5
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 6.5e-117 426.0 871 38.6
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 4.0e-114 416.8 832 37.3
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 1.3e-112 411.8 773 39.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.7e-112 411.4 839 37.9
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.3e-109 401.7 844 36.0
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.1e-108 398.7 825 36.4
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.5e-108 397.5 848 37.9
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 1.0e-106 392.1 813 37.0
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.3e-104 382.5 846 36.5
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.1e-103 380.2 798 40.0
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 9.2e-103 379.0 815 37.8
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 9.2e-103 379.0 849 37.2
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 3.5e-102 377.1 918 35.4
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 1.9e-100 371.3 857 36.1
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 6.8e-98 362.8 780 39.1
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 1.2e-97 362.1 786 38.9
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 5.7e-97 359.8 572 43.9
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.1e-95 355.5 846 35.1
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.4e-95 354.4 568 40.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 4.1e-95 353.6 564 43.4
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.6e-94 351.7 651 41.6
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 7.8e-94 349.4 628 40.4
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.0e-93 349.0 577 40.9
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 3.9e-93 347.1 780 37.6
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.1e-92 345.5 790 35.1
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 1.5e-92 345.1 854 34.0
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 1.9e-92 344.7 877 34.2
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 2.1e-91 341.3 850 34.1
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 1.1e-90 339.0 864 34.1
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 8.9e-90 335.9 804 34.3
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.0e-89 334.7 833 34.0
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.7e-88 331.6 841 33.8
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 2.9e-88 330.9 854 33.6
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 1.7e-85 321.6 491 42.0
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 3.0e-85 320.9 882 34.7
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 1.5e-84 318.5 779 34.7
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.9e-84 318.2 888 31.6
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.4e-82 312.0 862 32.4
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 1.5e-81 308.5 619 40.7
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 9.9e-81 305.8 620 35.6
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 2.4e-79 301.2 805 33.2
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 4.1e-79 300.4 798 33.8
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 7.1e-79 299.7 590 37.6
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 1.0e-77 295.8 827 33.1
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 8.6e-77 292.7 807 32.0
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 5.6e-76 290.0 811 33.5
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.8e-75 287.7 805 31.9
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 3.6e-75 287.3 590 39.7
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 1.8e-74 285.0 845 32.4
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 3.1e-74 284.3 849 32.2
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 6.8e-74 283.1 804 32.0
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 8.9e-74 282.7 854 31.5
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.2e-71 274.2 706 34.3
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 4.1e-71 273.9 890 30.4
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 1.2e-70 272.3 594 37.9
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.2e-70 272.3 601 36.9
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.9e-68 265.0 895 30.5
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.5e-68 264.6 797 32.0
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 9.6e-68 262.7 872 30.6
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 8.1e-67 259.6 939 29.1
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.8e-66 258.5 794 30.2
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.2e-65 255.8 825 31.0
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 7.6e-65 253.1 875 29.3
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 2.2e-64 251.5 784 31.4
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 6.4e-64 250.0 852 31.2
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 6.4e-64 250.0 267 52.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 1.1e-63 249.2 825 31.4
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.5e-60 238.8 857 30.1
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 2.5e-60 238.0 835 30.2
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 2.5e-60 238.0 806 32.0
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 2.5e-60 238.0 806 32.0
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 4.3e-60 237.3 829 29.7
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 5.6e-60 236.9 538 35.1
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.6e-59 235.3 834 30.3
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 1.6e-59 235.3 597 33.2
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.4e-58 232.3 641 34.6
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 3.1e-58 231.1 817 31.6
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 5.8e-57 226.9 811 31.1
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 2.2e-56 224.9 818 29.2
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 7.9e-54 216.5 772 32.1
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.7e-46 191.4 697 28.8
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 3.5e-46 191.0 636 29.4
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.3e-45 189.1 630 29.4
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 8.7e-45 186.4 686 29.0
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 8.7e-45 186.4 515 29.7
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 5.6e-44 183.7 681 30.5
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.4e-44 183.3 171 56.1
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 7.4e-44 183.3 823 27.2
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 2.8e-43 181.4 583 33.3
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.4e-42 179.1 695 29.5
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 1.0e-40 172.9 654 30.9
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 8.5e-32 143.3 513 30.6
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.1e-18 99.8 156 43.6
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.0e-13 81.6 432 25.2
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 7.0e-10 70.5 451 24.4
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 7.0e-10 70.5 451 24.4
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 1.7e-08 65.9 126 39.7
Mapoly0003s0122 Marchantia polymorpha HOM05D020720 ORTHO05D007477 1.5e-07 62.8 93 37.6
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 3.2e-07 61.6 73 47.9
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 7.2e-07 60.5 121 36.4
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 7.2e-07 60.5 367 24.0


User provided reference genes

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