Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G003940 Citrullus lanatus HOM05D001779 ORTHO05D001753 1.8e-67 259.2 138 100.0
MELO3C023572.2 Cucumis melo HOM05D001779 ORTHO05D001753 1.1e-40 170.2 112 83.9
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 4.9e-33 144.8 86 89.5
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 2.8e-28 129.0 87 81.6
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.2e-18 97.1 105 58.1
CSS0002295 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.5e-18 96.7 105 58.1
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.5e-18 96.7 105 58.1
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 7.5e-18 94.4 116 51.7
QL04p008865 Quercus lobata HOM05D001779 ORTHO05D001753 1.3e-17 93.6 67 73.1
A09p46160 Brassica napus HOM05D001779 ORTHO05D001753 1.7e-17 93.2 89 60.7
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 1.7e-17 93.2 112 53.6
Manes.07G008000 Manihot esculenta HOM05D001779 ORTHO05D001753 1.7e-17 93.2 57 80.7
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 3.7e-17 92.0 84 63.1
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 4.9e-17 91.7 84 63.1
BraA09t40080Z Brassica rapa HOM05D001779 ORTHO05D001753 4.9e-17 91.7 98 57.1
Hma1.2p1_1399F.1_g280850 Hydrangea macrophylla HOM05D001779 ORTHO05D001753 8.3e-17 90.9 70 68.6
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.4e-16 90.1 84 60.7
TWI09G1636 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 1.4e-16 90.1 113 54.0
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 3.2e-16 89.0 67 67.2
Sp5g09160 Schrenkiella parvula HOM05D001779 ORTHO05D001753 4.1e-16 88.6 99 55.6
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 5.4e-16 88.2 112 50.9
THA.LOC104826684 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 7.0e-16 87.8 99 53.5
Actinidia19409 Actinidia chinensis HOM05D001779 ORTHO05D001753 9.2e-16 87.4 97 51.5
Dinv09324 Davidia involucrata HOM05D001779 ORTHO05D001753 9.2e-16 87.4 99 54.5
BcaC07g39673 Brassica carinata HOM05D001779 ORTHO05D001753 1.2e-15 87.0 98 53.1
C08p28390 Brassica napus HOM05D001779 ORTHO05D001753 1.2e-15 87.0 98 53.1
BolC8t50449H Brassica oleracea HOM05D001779 ORTHO05D001753 2.0e-15 86.3 97 51.5
Sabra09G0042900 Salix brachista HOM05D001779 ORTHO05D001753 2.0e-15 86.3 108 51.9
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 2.7e-15 85.9 51 82.4
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 2.7e-15 85.9 66 63.6
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 3.5e-15 85.5 101 55.4
CiPaw.14G002100 Carya illinoinensis HOM05D001779 ORTHO05D001753 3.5e-15 85.5 80 63.8
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 4.6e-15 85.1 114 52.6
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 4.6e-15 85.1 68 61.8
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 4.6e-15 85.1 68 61.8
vmacro13689 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 6.0e-15 84.7 60 71.7
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 7.8e-15 84.3 103 53.4
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 1.0e-14 84.0 102 53.9
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 1.0e-14 84.0 105 49.5
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 1.7e-14 83.2 60 70.0
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 3.9e-14 82.0 99 53.5
SalBow6G2927 Salvia bowleyana HOM05D001779 ORTHO05D001753 5.0e-14 81.6 52 71.2
Ca_19095_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 8.6e-14 80.9 108 50.9
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 8.6e-14 80.9 109 47.7
Hund15421 Selenicereus undatus HOM05D001779 ORTHO05D001753 8.6e-14 80.9 67 62.7
Atru.chr11.2583 Acer truncatum HOM05D001779 ORTHO05D001753 1.5e-13 80.1 57 70.2
FAN10G0484 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.5e-13 80.1 89 57.3
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.9e-13 79.7 108 51.9
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 2.5e-13 79.3 85 60.0
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 2.5e-13 79.3 85 60.0
Nitab4.5_0001676g0060 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.5e-13 79.3 102 47.1
Sc14g0005010 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.5e-13 79.3 52 76.9
SGA_v2.0_scaffold36G14402 Striga asiatica HOM05D001779 ORTHO05D001753 2.5e-13 79.3 62 64.5
PGR031G1422 Punica granatum HOM05D001779 ORTHO05D001753 3.3e-13 79.0 100 52.0
MSTRG.5036 Avicennia marina HOM05D001779 ORTHO05D001753 4.3e-13 78.6 68 64.7
Migut.N01786 Erythranthe guttata HOM05D001779 ORTHO05D001753 5.6e-13 78.2 52 73.1
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 5.6e-13 78.2 88 56.8
Nitab4.5_0000087g0090 Nicotiana tabacum HOM05D001779 ORTHO05D001753 5.6e-13 78.2 102 48.0
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 7.3e-13 77.8 67 64.2
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 7.3e-13 77.8 60 68.3
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 7.3e-13 77.8 112 47.3
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.6e-12 76.6 52 73.1
TPR.G28387 Trifolium pratense HOM05D001779 ORTHO05D001753 1.6e-12 76.6 110 47.3
Peaxi162Scf00071g01040 Petunia axillaris HOM05D001779 ORTHO05D001753 2.1e-12 76.3 97 49.5
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 2.8e-12 75.9 103 50.5
TPR.G40073 Trifolium pratense HOM05D001779 ORTHO05D001753 2.8e-12 75.9 110 46.4
CDE04G3359 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 3.6e-12 75.5 83 50.6
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 3.6e-12 75.5 100 49.0
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 4.7e-12 75.1 98 51.0
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 6.2e-12 74.7 52 71.2
EL10Ac2g03860 Beta vulgaris HOM05D001779 ORTHO05D001753 8.1e-12 74.3 55 67.3
TAR633G2494 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.1e-11 73.9 98 50.0
Cc02_g28360 Coffea canephora HOM05D001779 ORTHO05D001753 1.4e-11 73.6 80 56.2
Duzib133G0213 Durio zibethinus HOM05D001779 ORTHO05D001753 1.4e-11 73.6 70 58.6
vmacro00260 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 1.4e-11 73.6 97 49.5
Ciclev10020011m.g Citrus clementina HOM05D001779 ORTHO05D001753 2.3e-11 72.8 71 53.5
EL10Ac9g20931 Beta vulgaris HOM05D000308 ORTHO05D001753 5.2e-11 71.6 52 67.3
Phvul.008G285500 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 5.2e-11 71.6 98 44.9
VMungo0647G1551 Vigna mungo HOM05D001779 ORTHO05D001753 1.2e-10 70.5 97 44.3
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 2.0e-10 69.7 57 63.2
TAR633G1986 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.0e-10 69.7 97 47.4
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 4.4e-10 68.6 71 56.3
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea HOM05D001779 ORTHO05D001753 7.5e-10 67.8 102 42.2
PSO063G6602 Papaver somniferum HOM05D001779 ORTHO05D001753 7.5e-10 67.8 57 61.4
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 9.8e-10 67.4 71 54.9
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.3e-09 67.0 101 47.5
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 6.4e-09 64.7 99 48.5
arahy.Tifrunner.gnm1.ann1.243BFB Arachis hypogaea HOM05D001779 ORTHO05D001753 8.3e-09 64.3 125 42.4
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 8.3e-09 64.3 102 44.1
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 1.4e-08 63.5 96 43.8
DCAR_016451 Daucus carota HOM05D001779 ORTHO05D001753 2.4e-08 62.8 47 61.7
vmacro00256 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 2.4e-08 62.8 43 69.8
Lsat_1_v5_gn_4_115801 Lactuca sativa HOM05D001779 ORTHO05D001753 5.4e-08 61.6 77 50.6
BcaB01g00305 Brassica carinata HOM05D001779 ORTHO05D001753 9.2e-08 60.8 77 49.4
HanXRQChr16g0501781 Helianthus annuus HOM05D001779 ORTHO05D001753 9.2e-08 60.8 111 43.2


User provided reference genes

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