Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.4e-35 152.5 81 100.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 7.5e-18 93.6 85 65.9
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.1e-12 75.5 65 64.6
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.8e-11 72.4 63 63.5
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 3.1e-11 71.6 66 65.2
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.0e-11 71.2 66 62.1
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.2e-11 70.9 65 58.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.0e-10 68.9 63 61.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.0e-10 68.9 63 61.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.6e-10 68.6 65 58.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.6e-10 68.6 67 55.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.6e-10 68.6 63 61.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.4e-10 68.2 63 58.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.4e-10 68.2 66 62.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.4e-10 67.8 65 58.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.4e-10 67.8 66 62.1
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.5e-10 67.0 66 54.5
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.3e-09 66.2 60 61.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.3e-09 66.2 63 60.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-09 66.2 63 58.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.2e-09 65.5 65 56.9
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.2e-09 65.5 65 56.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.9e-09 65.1 61 60.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.9e-09 65.1 59 59.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.9e-09 65.1 63 57.1
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.9e-09 65.1 63 57.1
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.9e-09 65.1 68 61.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 2.9e-09 65.1 63 58.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.7e-09 64.7 65 58.5
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 3.7e-09 64.7 68 60.3
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.7e-09 64.7 66 62.1
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.7e-09 64.7 63 57.1
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.9e-09 64.3 61 60.7
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.9e-09 64.3 63 58.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.9e-09 64.3 63 65.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 6.4e-09 63.9 66 57.6
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.4e-09 63.9 63 60.3
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 6.4e-09 63.9 60 63.3
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.4e-09 63.9 65 53.8
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 8.3e-09 63.5 65 58.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 8.3e-09 63.5 59 57.6
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.3e-09 63.5 63 60.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.1e-08 63.2 61 59.0
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.1e-08 63.2 63 52.4
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.4e-08 62.8 64 57.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.4e-08 62.8 64 60.9
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-08 62.8 61 62.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.9e-08 62.4 70 54.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.9e-08 62.4 61 60.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.9e-08 62.4 66 57.6
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.2e-08 61.6 63 58.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.1e-08 61.2 65 55.4
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 4.1e-08 61.2 65 55.4
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 4.1e-08 61.2 66 56.1
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.1e-08 61.2 63 57.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 5.4e-08 60.8 62 61.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.4e-08 60.8 63 57.1
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.1e-08 60.5 64 57.8
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 7.1e-08 60.5 66 56.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.1e-08 60.5 64 54.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 9.2e-08 60.1 64 56.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 9.2e-08 60.1 63 57.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 9.2e-08 60.1 66 56.1
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 9.2e-08 60.1 64 56.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.2e-07 59.7 65 55.4
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.2e-07 59.7 65 55.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.2e-07 59.7 58 60.3
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.2e-07 59.7 65 56.9
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.2e-07 59.7 64 56.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.2e-07 59.7 64 56.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.6e-07 59.3 65 55.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.6e-07 59.3 63 55.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.6e-07 59.3 57 59.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.1e-07 58.9 65 55.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 2.1e-07 58.9 65 58.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.1e-07 58.9 64 54.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.1e-07 58.9 64 54.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.1e-07 58.9 75 48.0
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.1e-07 58.9 74 51.4
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.1e-07 58.9 57 56.1
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.1e-07 58.9 64 56.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.7e-07 58.5 65 55.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.7e-07 58.5 65 53.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.7e-07 58.5 61 57.4
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.5e-07 58.2 67 53.7
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.5e-07 58.2 67 53.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.5e-07 58.2 65 49.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.5e-07 58.2 67 52.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.5e-07 58.2 57 59.6
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.5e-07 58.2 71 53.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.5e-07 58.2 65 56.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.5e-07 58.2 65 55.4
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 4.6e-07 57.8 65 55.4
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 4.6e-07 57.8 65 55.4
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 4.6e-07 57.8 65 55.4
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 4.6e-07 57.8 59 59.3
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.6e-07 57.8 55 56.4
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.6e-07 57.8 65 55.4
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 4.6e-07 57.8 67 52.2
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 6.0e-07 57.4 65 55.4
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 6.0e-07 57.4 65 55.4
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 6.0e-07 57.4 64 56.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 6.0e-07 57.4 63 54.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 7.8e-07 57.0 65 56.9
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 7.8e-07 57.0 65 56.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 7.8e-07 57.0 64 53.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.8e-07 57.0 67 52.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-06 56.6 65 55.4
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.7e-06 55.8 64 51.6
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.7e-06 55.8 64 59.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 2.3e-06 55.5 61 57.4
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 5.1e-06 54.3 57 57.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.1e-06 54.3 65 52.3
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.1e-06 54.3 65 52.3
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.1e-06 54.3 65 52.3
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.1e-06 54.3 63 54.0
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 5.1e-06 54.3 63 52.4
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 6.6e-06 53.9 56 58.9
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.6e-06 53.9 74 50.0
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 8.6e-06 53.5 64 53.1


User provided reference genes

Program Settings