Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.2e-287 992.6 552 100.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.4e-240 835.5 510 86.1
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.1e-228 795.8 500 83.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.6e-183 646.7 501 67.1
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.5e-181 639.4 508 65.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.1e-180 636.3 514 62.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.6e-180 635.6 494 66.8
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.0e-179 632.1 500 66.6
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.4e-178 628.6 494 66.4
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.8e-178 628.2 501 66.5
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.6e-178 627.9 494 66.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 3.7e-177 625.5 500 67.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-176 623.6 493 67.3
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 4.1e-176 622.1 492 64.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.4e-176 621.7 498 64.9
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-173 614.0 491 65.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-173 614.0 491 65.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.3e-173 612.1 491 65.0
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.2e-172 610.5 500 63.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.2e-172 610.5 496 64.3
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.7e-172 608.6 500 62.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-171 607.4 494 65.4
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.8e-171 606.7 497 64.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.1e-171 605.9 493 64.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 3.1e-171 605.9 490 65.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.1e-171 605.9 489 65.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.5e-170 603.6 491 64.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.0e-170 603.2 494 64.2
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.6e-170 602.8 494 64.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.4e-170 602.1 490 64.7
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.8e-170 601.7 499 63.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.9e-170 600.9 489 64.8
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 4.9e-169 598.6 492 63.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.1e-168 597.4 488 63.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.1e-168 597.4 489 64.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.9e-168 596.7 468 66.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 3.2e-168 595.9 486 64.0
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 3.2e-168 595.9 510 62.7
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.2e-168 595.5 492 63.8
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.2e-168 595.5 489 64.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.4e-168 595.1 499 63.3
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 7.1e-168 594.7 496 63.1
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 9.3e-168 594.3 493 63.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 9.3e-168 594.3 490 62.9
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.3e-168 594.3 499 63.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-167 593.2 494 63.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.7e-167 592.8 493 62.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.7e-167 592.8 492 63.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 3.5e-167 592.4 538 60.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-167 592.4 490 63.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.5e-167 592.4 488 62.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.0e-166 590.9 490 63.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.7e-166 590.1 493 63.1
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.7e-166 590.1 517 62.1
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-166 589.7 499 63.1
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-166 589.3 490 62.9
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.0e-166 589.3 441 68.9
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.9e-166 589.0 489 63.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.1e-166 588.6 489 62.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 6.6e-166 588.2 487 64.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.7e-166 587.8 489 62.0
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.7e-166 587.8 489 62.0
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-165 587.4 489 62.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.9e-165 586.6 489 62.6
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.5e-165 586.3 486 64.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.3e-165 585.9 495 63.2
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.3e-165 585.5 489 61.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.6e-165 585.1 499 63.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 9.6e-165 584.3 489 61.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-164 583.9 492 62.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.6e-164 583.6 490 61.4
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.6e-164 583.6 431 68.7
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.1e-164 583.2 493 62.3
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 2.8e-164 582.8 489 61.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.8e-164 582.8 495 63.4
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 6.2e-164 581.6 495 63.2
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.1e-163 579.3 487 62.2
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.3e-163 578.6 487 62.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 6.9e-163 578.2 492 61.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-162 577.0 502 59.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.5e-162 577.0 502 59.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.5e-162 577.0 490 61.2
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.0e-162 576.6 501 60.7
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.0e-162 576.6 488 60.9
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.4e-162 575.9 488 61.7
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.4e-162 575.5 460 67.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 9.9e-162 574.3 486 60.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-161 572.4 516 58.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 8.4e-161 571.2 488 62.1
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.4e-160 569.7 500 59.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.4e-160 569.7 500 60.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 9.3e-160 567.8 488 62.5
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 6.0e-159 565.1 516 59.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.3e-158 563.1 523 57.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-158 562.4 499 61.1
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.3e-157 559.3 489 60.9
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 3.3e-157 559.3 504 58.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 9.6e-157 557.8 586 53.1
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-156 557.4 511 58.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.4e-155 553.1 517 59.8
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.1e-155 552.7 445 65.6
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-154 550.4 495 60.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.1e-152 544.3 486 60.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.1e-151 540.0 435 63.7
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.1e-150 535.4 488 59.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.8e-148 529.6 501 57.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 7.9e-143 511.5 497 56.7
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.6e-141 504.6 521 52.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.1e-140 503.4 440 60.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.8e-139 500.4 496 54.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.4e-139 500.0 482 53.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.1e-139 499.6 496 54.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.2e-135 487.6 486 52.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.6e-135 487.3 503 51.9
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-133 480.3 452 56.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.9e-131 471.9 431 57.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.2e-129 466.8 393 63.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 6.7e-126 455.3 472 52.5
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.3e-121 441.0 492 49.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.2e-120 436.0 489 53.2
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.4e-115 421.0 511 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.3e-115 419.1 502 45.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 5.3e-115 419.1 513 45.2
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.5e-114 416.4 317 67.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.9e-114 415.6 487 45.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-113 414.1 488 46.1
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.5e-112 410.2 431 50.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.4e-110 404.4 500 51.0
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 4.0e-110 402.9 487 45.2
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 5.2e-110 402.5 360 60.6
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-99 368.2 486 43.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.2e-96 356.3 291 63.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-94 351.3 437 46.9
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.1e-88 331.6 316 57.0
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.6e-88 329.3 294 59.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.5e-72 278.1 357 47.9
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.2e-68 264.2 356 43.3
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.1e-64 251.9 240 55.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.6e-57 226.1 173 68.2
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.8e-52 210.3 129 74.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.6e-50 204.9 163 70.6
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.5e-48 198.4 154 64.3
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.1e-47 192.6 200 55.0
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.1e-43 182.2 182 53.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.9e-36 157.5 167 52.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-31 141.7 135 62.2
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.6e-31 141.7 94 75.5
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.5e-26 124.0 118 57.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 7.9e-26 122.9 118 55.9
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.6e-23 115.2 77 67.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 7.6e-21 106.3 72 75.0
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.5e-19 101.3 99 51.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 8.2e-15 86.3 57 71.9
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.4e-13 80.9 100 47.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.0e-12 77.0 63 60.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 5.0e-12 77.0 43 79.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.0e-09 67.8 43 74.4


User provided reference genes

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