Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 3242.6 1619 100.0
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1858.2 1561 63.5
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1639.8 970 86.5
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1352.0 783 87.9
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1311.6 782 84.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1305.0 782 84.4
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1293.5 782 84.0
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1244.6 763 82.4
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 782 76.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 782 74.7
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1176.8 761 76.5
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1171.0 771 75.4
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 782 73.9
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1168.3 760 75.7
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1166.8 760 75.3
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 761 75.3
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 761 75.6
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1165.6 782 74.4
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1163.3 761 75.4
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1162.5 761 75.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1158.7 781 74.0
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1155.6 782 74.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 761 75.4
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 781 73.1
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1146.7 786 72.8
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1146.3 763 74.8
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1146.0 761 74.2
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 788 73.1
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 762 74.0
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1139.0 761 73.7
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 802 70.6
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 773 72.1
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 790 72.0
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 782 72.9
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 783 72.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 788 72.6
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 762 73.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1129.8 761 73.6
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1128.2 781 72.0
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1126.3 782 71.9
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 781 71.7
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 787 70.9
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 790 71.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1116.7 761 71.6
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1111.7 780 70.4
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1109.7 781 70.2
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1105.1 761 71.6
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1104.7 886 65.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 761 72.0
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1103.6 761 71.6
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1102.4 763 72.0
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1102.4 761 71.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1101.3 761 72.3
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1099.3 764 69.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1090.9 764 69.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1089.7 761 71.2
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1088.9 761 68.9
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1088.9 762 71.3
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1088.6 763 71.0
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 764 68.6
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 783 70.4
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 764 68.8
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 761 69.1
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1084.3 761 68.9
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1083.9 761 68.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1081.2 761 68.7
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1078.2 757 70.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 2.2e-311 1073.2 760 70.5
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 2.2e-311 1073.2 761 70.6
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 7.8e-311 1071.2 761 68.5
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 1.7e-310 1070.1 761 67.8
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 6.4e-310 1068.1 781 68.6
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 1.9e-309 1066.6 761 68.2
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 2.4e-309 1066.2 761 68.3
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 4.2e-309 1065.4 778 67.5
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 2.1e-308 1063.1 761 69.8
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 5.1e-307 1058.5 761 67.9
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 2.8e-305 1052.7 763 67.1
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.8e-305 1052.7 757 68.7
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 9.9e-303 1044.3 760 68.7
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 2.7e-300 1036.2 761 66.5
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 7.9e-300 1034.6 763 66.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.0e-299 1034.2 782 67.3
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.1e-298 1030.8 763 66.3
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 1.9e-298 1030.0 761 66.0
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 9.6e-298 1027.7 701 72.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 1.8e-296 1023.5 766 65.7
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 2.0e-295 1020.0 760 65.7
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 4.2e-293 1012.3 702 72.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 4.2e-293 1012.3 765 67.5
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.0e-291 1006.1 756 66.0
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.3e-288 995.3 699 70.5
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 3.5e-284 982.6 792 65.2
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 7.9e-284 981.5 719 67.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.8e-280 970.3 749 66.2
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.1e-280 969.5 674 71.7
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 7.9e-276 954.9 761 64.8
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 4.3e-274 949.1 753 62.8
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 2.6e-271 939.9 564 82.3
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 7.7e-271 938.3 785 61.3
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.1e-261 907.9 761 62.5
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.2e-261 906.4 757 61.2
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.3e-258 896.3 759 59.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.7e-257 894.0 762 58.8
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.2e-257 893.6 652 69.6
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 7.7e-255 885.2 641 70.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-242 844.3 693 62.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 7.0e-240 835.5 669 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 5.5e-237 825.9 707 58.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 5.9e-231 805.8 537 73.0
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 2.3e-211 740.7 535 69.3
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.6e-207 728.0 771 53.2
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.8e-182 644.8 428 73.4
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 6.7e-174 616.3 469 66.3
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.4e-139 502.3 356 71.1
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 3.0e-134 484.6 351 68.1
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-127 461.5 618 45.3
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.0e-118 433.0 257 82.5
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.5e-112 409.8 372 55.4
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.1e-99 369.8 249 69.5
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 2.3e-89 335.5 276 62.7
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.9e-75 289.3 260 61.2
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-72 280.0 266 56.4
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 3.6e-71 275.0 336 46.4
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.8e-68 265.0 194 67.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-64 253.4 252 54.4
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 3.8e-60 238.4 245 51.8
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.6e-58 233.0 138 79.7
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 7.4e-56 224.2 196 61.2
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.2e-55 221.1 162 69.8
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.8e-52 211.8 162 68.5
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 5.9e-45 188.0 150 63.3
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 2.3e-41 176.0 148 60.1
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-41 174.1 190 49.5
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.3e-39 167.9 101 75.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-38 167.2 87 88.5
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.4e-38 166.0 117 69.2
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.6e-37 162.5 114 72.8
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.0e-36 158.3 114 71.1
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.9e-35 156.4 85 84.7
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.2e-35 155.6 86 84.9
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 3.2e-35 155.6 106 70.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.0e-33 150.6 120 60.8
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.0e-33 149.1 95 71.6
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.9e-33 148.7 89 73.0
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 7.7e-29 134.4 94 70.2
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-26 127.1 76 78.9
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-26 127.1 76 78.9
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-26 125.9 76 77.6
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.1e-26 124.8 62 88.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.0e-26 124.4 64 87.5
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.3e-25 122.9 62 88.7
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.1e-24 120.6 95 62.1
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-24 120.6 72 77.8
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.6e-21 110.2 192 37.5
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.9e-21 108.2 80 66.2
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-20 107.1 74 64.9
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-19 104.0 192 36.5
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 9.4e-19 100.9 159 40.3
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 4.8e-15 88.6 120 44.2
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 8.5e-12 77.8 45 75.6
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.9e-11 76.6 78 51.3
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 3.0e-09 69.3 79 45.6
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.6e-08 66.2 44 65.9
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.4e-08 65.5 30 90.0
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 5.7e-08 65.1 176 33.5
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 3.1e-06 59.3 51 56.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 5.4e-06 58.5 151 29.1


User provided reference genes

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