Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.1e-35 152.9 84 100.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 2.0e-34 148.7 84 89.3
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.9e-28 128.3 84 76.2
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 6.4e-28 127.1 84 71.4
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 8.3e-28 126.7 68 88.2
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 4.1e-27 124.4 84 73.8
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 4.1e-27 124.4 68 88.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.6e-26 122.5 85 72.9
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 6.0e-26 120.6 84 71.4
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.3e-25 119.4 81 69.1
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.3e-25 119.4 79 73.4
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.3e-25 119.4 85 72.9
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.7e-25 119.0 83 72.3
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 5.0e-25 117.5 77 72.7
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 8.6e-25 116.7 83 69.9
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.5e-24 115.9 69 78.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.5e-24 115.9 89 67.4
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.9e-24 115.5 85 76.5
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.5e-24 115.2 68 79.4
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.5e-24 115.2 69 75.4
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 5.6e-24 114.0 67 76.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 5.6e-24 114.0 80 68.8
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 7.3e-24 113.6 69 73.9
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 2.1e-23 112.1 67 73.1
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.1e-23 112.1 84 63.1
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.1e-23 112.1 69 75.4
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 2.8e-23 111.7 69 75.4
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.8e-23 111.7 84 67.9
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 2.8e-23 111.7 82 64.6
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 3.6e-23 111.3 84 63.1
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 3.6e-23 111.3 82 64.6
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.7e-23 110.9 77 67.5
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.7e-23 110.9 77 67.5
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 4.7e-23 110.9 77 70.1
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 4.7e-23 110.9 77 70.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 6.2e-23 110.5 69 71.0
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 6.2e-23 110.5 67 73.1
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 8.1e-23 110.2 84 64.3
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.8e-22 109.0 84 65.5
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.8e-22 109.0 61 80.3
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 2.3e-22 108.6 68 69.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 4.0e-22 107.8 77 66.2
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.0e-22 107.8 69 71.0
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 5.2e-22 107.5 73 65.8
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 5.2e-22 107.5 69 73.9
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 5.2e-22 107.5 67 71.6
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 5.2e-22 107.5 84 63.1
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 6.8e-22 107.1 69 72.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 8.9e-22 106.7 69 69.6
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 1.5e-21 105.9 67 68.7
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.0e-21 105.5 88 61.4
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.0e-21 105.5 88 61.4
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 2.0e-21 105.5 82 62.2
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 3.4e-21 104.8 69 65.2
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 3.4e-21 104.8 87 57.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.4e-21 104.8 81 63.0
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.4e-21 104.4 84 63.1
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 9.9e-21 103.2 83 61.4
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.3e-20 102.8 57 78.9
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.2e-20 102.1 84 63.1
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.9e-20 101.7 81 61.7
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 6.4e-20 100.5 67 67.2
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.1e-19 99.8 69 65.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.1e-19 99.8 62 69.4
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 4.1e-19 97.8 66 65.2
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 7.1e-19 97.1 55 83.6
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 9.2e-19 96.7 63 71.4
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 1.2e-18 96.3 69 62.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.7e-18 95.1 85 61.2
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.6e-18 94.4 80 52.5
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.0e-17 91.7 96 49.0
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.1e-17 90.9 62 66.1
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-16 89.4 81 55.6
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.9e-16 89.0 81 55.6
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.9e-16 89.0 81 55.6
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.3e-16 87.8 81 55.6
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 9.5e-16 86.7 83 54.2
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.2e-15 86.3 68 60.3
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 6.2e-15 84.0 84 53.6
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.1e-14 83.2 84 53.6
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-14 83.2 116 41.4
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.4e-14 82.0 65 60.0
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 2.4e-14 82.0 83 54.2
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.1e-14 81.6 62 62.9
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.1e-14 81.6 62 62.9
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 4.0e-14 81.3 63 61.9
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 2.6e-13 78.6 61 62.3
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 2.6e-13 78.6 61 62.3
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.6e-13 78.6 61 62.3
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.4e-13 78.2 90 51.1
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 5.8e-13 77.4 46 71.7
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 7.6e-13 77.0 44 77.3
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 9.9e-13 76.6 58 60.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.7e-12 75.9 80 46.2
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.8e-12 74.7 62 48.4
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.8e-12 74.7 51 54.9
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 6.4e-12 73.9 62 54.8
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 6.4e-12 73.9 58 60.3
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 6.4e-12 73.9 82 48.8
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 6.4e-12 73.9 54 63.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 8.4e-12 73.6 68 52.9
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.4e-11 72.0 58 58.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.2e-11 71.6 44 63.6
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 4.1e-11 71.2 60 56.7
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 4.1e-11 71.2 60 56.7
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 4.1e-11 71.2 60 56.7
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.1e-11 71.2 63 52.4
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 5.4e-11 70.9 38 73.7
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.1e-11 70.5 83 48.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 7.1e-11 70.5 50 58.0
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.2e-10 69.7 41 68.3
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.6e-10 69.3 52 59.6
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 2.7e-10 68.6 57 63.2
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.5e-10 68.2 61 62.3
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 3.5e-10 68.2 57 54.4
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 4.6e-10 67.8 63 49.2
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 7.8e-10 67.0 58 65.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 7.8e-10 67.0 49 55.1
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 3.0e-09 65.1 65 49.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 3.9e-09 64.7 57 50.9
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-09 63.9 57 50.9
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 8.7e-09 63.5 172 28.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.9e-08 62.4 38 65.8
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 3.3e-08 61.6 105 40.0
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.3e-08 61.6 43 55.8
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 5.6e-08 60.8 44 56.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 7.3e-08 60.5 38 57.9
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 7.3e-08 60.5 38 63.2


User provided reference genes

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