Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 6.0e-109 397.5 198 100.0
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.9e-92 341.7 192 86.5
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 9.9e-88 327.0 198 81.8
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.1e-85 319.3 195 80.5
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.1e-85 319.3 192 79.2
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 3.1e-73 278.9 195 67.7
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 7.1e-70 267.7 196 65.3
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 7.9e-69 264.2 195 64.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.0e-68 263.8 190 68.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.7e-68 261.2 195 65.1
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 8.7e-68 260.8 195 63.6
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.1e-67 260.4 193 64.8
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.1e-67 260.4 195 64.1
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.5e-67 260.0 195 64.6
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 4.3e-67 258.5 190 66.3
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 5.6e-67 258.1 195 63.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.3e-66 256.9 193 64.2
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.6e-66 256.5 192 63.5
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 2.1e-66 256.1 193 63.2
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.2e-66 254.6 193 65.3
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 6.2e-66 254.6 195 62.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.8e-65 253.1 191 62.3
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 2.4e-65 252.7 194 62.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.4e-65 252.7 190 63.2
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 2.4e-65 252.7 194 63.4
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 5.3e-65 251.5 190 62.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.5e-64 250.0 195 61.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 1.5e-64 250.0 172 69.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.0e-64 249.6 191 64.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 2.6e-64 249.2 192 63.0
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.4e-64 248.8 193 61.1
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.4e-64 248.8 190 64.2
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.4e-64 248.8 192 63.5
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-64 248.8 190 63.2
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 4.5e-64 248.4 195 62.1
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 4.5e-64 248.4 195 61.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 7.6e-64 247.7 194 59.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.3e-63 246.9 191 62.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.2e-63 246.1 190 64.7
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 2.2e-63 246.1 192 60.9
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.9e-63 245.7 193 61.7
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.9e-63 245.7 195 62.1
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.8e-63 245.4 194 61.3
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.8e-63 245.4 193 60.6
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 3.8e-63 245.4 193 61.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 4.9e-63 245.0 170 68.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 6.5e-63 244.6 192 62.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 8.4e-63 244.2 189 60.8
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 8.4e-63 244.2 189 63.5
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.1e-62 243.8 188 64.4
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.1e-62 243.8 191 62.8
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.1e-62 243.8 186 64.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-62 243.4 190 63.7
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.4e-62 243.4 192 60.9
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.5e-62 242.7 196 59.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.5e-62 242.7 195 61.5
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.5e-62 242.7 190 61.6
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.5e-62 242.7 170 68.2
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.2e-62 242.3 194 61.9
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.2e-62 242.3 190 62.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.2e-62 242.3 197 59.9
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 4.2e-62 241.9 190 62.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 7.1e-62 241.1 190 62.6
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.2e-61 240.4 195 61.0
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.2e-61 240.4 193 61.1
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.7e-61 239.2 194 60.8
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.5e-61 238.8 193 60.1
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 6.0e-61 238.0 190 61.6
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 6.0e-61 238.0 183 63.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 6.0e-61 238.0 178 66.3
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 7.9e-61 237.7 193 61.7
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 7.9e-61 237.7 192 60.4
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.0e-60 237.3 189 61.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.3e-60 236.9 193 59.6
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.0e-60 235.7 202 59.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 3.9e-60 235.3 170 66.5
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 5.1e-60 235.0 193 62.2
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 8.7e-60 234.2 190 62.1
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-59 233.4 204 58.3
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.9e-59 233.0 190 58.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.9e-59 233.0 190 60.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.9e-59 233.0 190 61.1
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 4.3e-59 231.9 169 66.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 5.7e-59 231.5 187 60.4
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 5.7e-59 231.5 175 66.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 9.6e-59 230.7 191 61.8
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.6e-58 229.9 189 59.3
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 3.7e-58 228.8 193 58.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.7e-58 228.8 187 59.9
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.8e-58 228.4 180 63.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 6.3e-58 228.0 189 60.3
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.4e-57 226.1 170 64.7
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 2.4e-57 226.1 193 57.0
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.3e-57 224.9 188 59.6
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.6e-56 222.6 167 66.5
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.5e-56 221.9 170 64.7
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.5e-56 221.9 179 61.5
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.0e-55 220.7 133 80.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.3e-55 220.3 170 64.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.3e-55 220.3 170 62.9
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.2e-55 219.5 176 59.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 3.8e-55 218.8 199 57.3
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.1e-54 217.2 172 61.0
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.4e-54 216.9 167 62.9
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.5e-54 214.9 170 61.2
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.2e-53 213.8 170 62.9
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-53 213.8 191 60.7
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 4.6e-53 211.8 169 60.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.0e-52 210.7 177 60.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.8e-52 209.9 161 59.6
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.8e-52 209.9 197 54.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 5.1e-52 208.4 188 53.2
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.9e-51 206.5 174 58.6
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.3e-51 205.3 190 56.3
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.3e-51 205.3 163 61.3
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.6e-50 203.4 175 57.7
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.8e-49 199.9 190 53.2
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 3.4e-48 195.7 139 66.9
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 7.7e-48 194.5 192 53.1
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.1e-46 190.7 139 66.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.2e-45 187.2 181 52.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.6e-45 186.8 187 51.9
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 3.6e-45 185.7 192 49.5
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.1e-43 180.6 118 73.7
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.0e-43 179.9 133 65.4
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.8e-42 176.0 192 47.9
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.0e-39 165.2 191 50.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.6e-37 159.1 118 63.6
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 4.7e-37 158.7 119 66.4
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.0e-36 157.5 183 44.8
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.8e-36 154.5 170 50.0
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.4e-33 147.1 190 44.2
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.3e-31 140.6 178 47.2
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 8.8e-20 101.3 116 50.0
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 3.6e-13 79.3 60 68.3
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-10 70.9 174 29.9
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.7e-10 70.5 58 51.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 5.4e-09 65.5 191 29.3
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.2e-08 64.3 52 53.8
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 2.7e-08 63.2 56 51.8
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.8e-07 59.3 173 24.9
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 5.0e-07 58.9 183 27.3
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.5e-06 56.6 172 26.7
MELO3C035027.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.5e-06 56.6 105 41.0
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.3e-06 56.2 145 28.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.3e-06 56.2 175 26.3
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 3.3e-06 56.2 168 29.8


User provided reference genes

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