Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.0e-81 305.1 149 100.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 7.5e-48 194.1 96 94.8
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.1e-43 180.3 96 88.5
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.6e-40 169.1 108 74.1
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 2.6e-40 169.1 108 74.1
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.8e-40 167.9 95 82.1
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 9.9e-40 167.2 92 83.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.3e-39 166.8 94 80.9
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.7e-39 166.4 91 83.5
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.7e-39 166.4 95 81.1
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.9e-39 164.9 94 81.9
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.9e-39 164.9 91 82.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 6.4e-39 164.5 91 82.4
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.1e-38 163.7 94 79.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.4e-38 163.3 94 79.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.9e-38 162.9 97 78.4
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 2.4e-38 162.5 94 80.9
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.1e-38 161.8 80 90.0
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 4.1e-38 161.8 94 77.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 7.1e-38 161.0 88 81.8
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 7.1e-38 161.0 91 79.1
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.2e-37 160.2 91 80.2
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.2e-37 160.2 91 80.2
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.1e-37 159.5 91 80.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.5e-37 158.7 94 78.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 6.0e-37 157.9 92 79.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.0e-37 157.9 91 79.1
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 7.8e-37 157.5 91 79.1
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-36 156.8 95 74.7
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-36 156.8 95 74.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-36 156.8 95 74.7
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.3e-36 156.8 91 80.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.3e-36 156.8 92 78.3
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.3e-36 156.8 92 79.3
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.3e-36 156.8 91 76.9
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.0e-36 155.6 85 83.5
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.0e-36 155.6 79 88.6
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 5.1e-36 154.8 80 86.2
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 5.1e-36 154.8 79 87.3
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 5.1e-36 154.8 93 75.3
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 6.6e-36 154.5 80 86.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.6e-36 154.5 94 75.5
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 6.6e-36 154.5 95 75.8
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 8.6e-36 154.1 94 74.5
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 8.6e-36 154.1 94 73.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.1e-35 153.7 91 74.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.1e-35 153.7 100 72.0
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.1e-35 153.7 77 88.3
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.1e-35 153.7 91 78.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.1e-35 153.7 107 66.4
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.5e-35 153.3 80 85.0
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.5e-35 153.3 96 74.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.9e-35 152.9 95 73.7
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.9e-35 152.9 95 73.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.5e-35 152.5 91 76.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.3e-35 152.1 91 72.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 4.3e-35 151.8 80 87.5
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 4.3e-35 151.8 91 75.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 5.6e-35 151.4 79 84.8
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.6e-35 151.4 95 72.6
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 7.3e-35 151.0 94 74.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.3e-35 151.0 79 87.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 9.5e-35 150.6 89 76.4
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.2e-34 150.2 91 72.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-34 150.2 91 72.5
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-34 150.2 91 72.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.2e-34 150.2 95 72.6
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.2e-34 150.2 91 74.7
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.2e-34 150.2 88 77.3
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.2e-34 150.2 86 81.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.6e-34 149.8 79 83.5
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.6e-34 149.8 78 84.6
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.6e-34 149.8 78 84.6
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.6e-34 149.8 90 72.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.6e-34 149.8 94 73.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.1e-34 149.4 91 75.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.1e-34 149.4 81 84.0
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.8e-34 149.1 90 72.2
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.8e-34 149.1 89 73.0
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.8e-34 149.1 89 73.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.8e-34 149.1 89 73.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.8e-34 149.1 89 73.0
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 3.6e-34 148.7 95 74.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.6e-34 148.7 91 75.8
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 3.6e-34 148.7 88 73.9
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 6.2e-34 147.9 91 71.4
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 6.2e-34 147.9 81 82.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 8.1e-34 147.5 84 76.2
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 8.1e-34 147.5 80 85.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-33 147.1 87 74.7
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-33 147.1 87 74.7
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.4e-33 146.0 110 64.5
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.4e-33 146.0 88 72.7
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.1e-33 145.6 91 74.7
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.0e-33 145.2 80 82.5
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.9e-33 144.1 87 72.4
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 3.4e-32 142.1 114 61.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.4e-32 141.7 79 81.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.3e-31 140.2 93 69.9
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.7e-31 139.8 79 79.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 4.9e-31 138.3 81 74.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 6.4e-31 137.9 94 66.0
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.4e-30 136.7 82 76.8
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 5.4e-30 134.8 69 91.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 9.2e-30 134.0 83 68.7
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.6e-29 133.3 81 69.1
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-28 130.2 66 86.4
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 8.7e-28 127.5 66 83.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.5e-27 126.7 65 83.1
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.5e-27 126.7 66 84.8
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 7.3e-27 124.4 78 71.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 8.1e-26 120.9 79 65.8
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 3.1e-25 119.0 74 73.0
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 9.0e-25 117.5 63 81.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.4e-24 115.2 73 71.2
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 5.8e-24 114.8 91 64.8
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.6e-24 114.4 79 67.1
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.2e-23 112.8 63 79.4
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.9e-23 112.5 53 90.6
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 2.9e-23 112.5 74 66.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 9.3e-22 107.5 66 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.5e-21 105.5 74 60.8
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.0e-21 104.8 63 71.4
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 7.8e-21 104.4 69 65.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.0e-20 102.4 108 46.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 9.6e-19 97.4 65 67.7
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 6.9e-17 91.3 58 70.7
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 9.0e-17 90.9 59 67.8
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.9e-15 85.9 71 54.9
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.8e-15 85.5 59 66.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.2e-13 80.5 73 52.1
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.1e-13 79.7 80 48.8
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.5e-13 79.0 80 53.8
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.5e-13 79.0 47 72.3
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.5e-11 73.6 33 90.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 6.4e-07 58.2 72 37.5


User provided reference genes

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