Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001640 Citrullus lanatus HOM05D006413 ORTHO05D007722 0.0e+00 1332.4 681 100.0
CsaV3_7G033700 Cucumis sativus L. HOM05D006413 ORTHO05D007722 0.0e+00 1129.0 735 83.4
MELO3C024283.2 Cucumis melo HOM05D006413 ORTHO05D007722 0.0e+00 1102.4 731 81.9
Sed0002155 Sechium edule HOM05D006413 ORTHO05D007722 2.3e-245 852.4 586 78.3
QL05p084380 Quercus lobata HOM05D006413 ORTHO05D007722 6.0e-217 758.1 754 58.0
Cfa002153 Carpinus fangiana HOM05D006413 ORTHO05D007722 7.6e-212 741.1 708 59.3
Prupe.3G022900 Prunus persica HOM05D006413 ORTHO05D007722 2.4e-210 736.1 736 57.3
Potri.002G183900 Populus trichocarpa HOM05D006413 ORTHO05D007722 6.6e-208 728.0 739 56.8
MD17G1162400 Malus domestica HOM05D006413 ORTHO05D007722 4.4e-204 715.3 723 55.6
FAN09G4880 Fragaria x ananassa HOM05D006413 ORTHO05D007722 2.4e-197 693.0 739 54.7
Lj5g0015604 Lotus japonicus HOM05D006413 ORTHO05D007722 4.0e-197 692.2 669 58.1
Gorai.008G133200 Gossypium raimondii HOM05D006413 ORTHO05D007722 5.3e-197 691.8 662 58.5
FAN02G2312 Fragaria x ananassa HOM05D006413 ORTHO05D007722 6.9e-197 691.4 743 53.3
Lj3g0007654 Lotus japonicus HOM05D006413 ORTHO05D007722 9.0e-197 691.0 669 58.0
Duzib138G1460 Durio zibethinus HOM05D006413 ORTHO05D007722 2.0e-196 689.9 662 57.7
Gohir.D12G122400 Gossypium hirsutum HOM05D006413 ORTHO05D007722 4.4e-196 688.7 662 58.3
Atru.chr5.817 Acer truncatum HOM05D006413 ORTHO05D007722 5.8e-196 688.3 731 55.0
GSVIVG01027488001 Vitis vinifera HOM05D006413 ORTHO05D007722 7.6e-196 688.0 659 58.4
Manes.01G237000 Manihot esculenta HOM05D006413 ORTHO05D007722 8.4e-195 684.5 660 57.9
Glyma.13G372900 Glycine max HOM05D006413 ORTHO05D007722 1.9e-194 683.3 663 58.8
RcHm_v2.0_Chr2g0149491 Rosa chinensis HOM05D006413 ORTHO05D007722 1.9e-194 683.3 771 53.0
Phvul.005G185400 Phaseolus vulgaris HOM05D006413 ORTHO05D007722 2.4e-194 682.9 712 55.8
Thecc.01G329000 Theobroma cacao HOM05D006413 ORTHO05D007722 2.4e-194 682.9 703 55.5
arahy.Tifrunner.gnm1.ann1.JWHJ24 Arachis hypogaea HOM05D006413 ORTHO05D007722 5.4e-194 681.8 678 57.8
TWI14G0709 Tripterygium wilfordii HOM05D006413 ORTHO05D007722 2.7e-193 679.5 665 56.2
COL.COLO4_23085 Corchorus olitorius HOM05D006413 ORTHO05D007722 6.0e-193 678.3 763 53.1
Gohir.A12G118600 Gossypium hirsutum HOM05D006413 ORTHO05D007722 6.0e-193 678.3 707 54.9
CANSAT01G2278 Cannabis sativa HOM05D006413 ORTHO05D007722 7.9e-193 677.9 694 57.3
TAR629G2159 Trochodendron aralioides HOM05D006413 ORTHO05D007722 8.7e-192 674.5 660 58.0
VMungo1080G0934 Vigna mungo HOM05D006413 ORTHO05D007722 1.1e-191 674.1 711 55.0
FvH4_6g36970 Fragaria vesca HOM05D006413 ORTHO05D007722 6.0e-185 651.7 737 52.5
TPR.G31784 Trifolium pratense HOM05D006413 ORTHO05D007722 1.1e-181 641.0 652 55.8
Medtr2g101420 Medicago truncatula HOM05D006413 ORTHO05D007722 1.4e-181 640.6 722 53.2
THA.LOC104802107 Tarenaya hassleriana HOM05D006413 ORTHO05D007722 3.1e-181 639.4 659 54.5
Rhsim01G0182400 Rhododendron simsii HOM05D006413 ORTHO05D007722 1.2e-180 637.5 725 50.9
Psat5g305280 Pisum sativum HOM05D006413 ORTHO05D007722 4.5e-180 635.6 662 54.8
Nn1g00502 Nelumbo nucifera HOM05D006413 ORTHO05D007722 2.5e-178 629.8 657 53.7
Thhalv10001331m.g Eutrema salsugineum HOM05D006413 ORTHO05D007722 3.9e-176 622.5 677 53.6
Sabra02G0131800 Salix brachista HOM05D006413 ORTHO05D007722 1.9e-175 620.2 716 52.1
Ca_00994_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 6.3e-174 615.1 666 53.9
Carub.0004s2964 Capsella rubella HOM05D006413 ORTHO05D007722 8.2e-174 614.8 693 51.4
Eucgr.E00011 Eucalyptus grandis HOM05D006413 ORTHO05D007722 8.4e-171 604.7 653 53.1
Aqoxy5G04399 Aquilegia oxysepala HOM05D006413 ORTHO05D007722 4.6e-169 599.0 672 50.9
CARHR142270 Cardamine hirsuta HOM05D006413 ORTHO05D007722 4.6e-169 599.0 656 52.7
Cpa.g.sc57.58 Carica papaya HOM05D006413 ORTHO05D007722 6.1e-169 598.6 628 53.7
AL4G46380 Arabidopsis lyrata HOM05D006413 ORTHO05D007722 7.9e-169 598.2 656 51.4
DCAR_001546 Daucus carota HOM05D006413 ORTHO05D007722 1.0e-168 597.8 644 53.1
Lalb_Chr24g0392741 Lupinus albus HOM05D006413 ORTHO05D007722 8.7e-168 594.7 659 53.0
Sc26g0002030 Simmondsia chinensis HOM05D006413 ORTHO05D007722 1.1e-167 594.3 670 50.7
Cc11_g00050 Coffea canephora HOM05D006413 ORTHO05D007722 1.5e-167 594.0 741 49.0
AT2G46915 Arabidopsis thaliana HOM05D006413 ORTHO05D007722 5.7e-167 592.0 660 51.8
Lsat_1_v5_gn_5_42660 Lactuca sativa HOM05D006413 ORTHO05D007722 2.8e-166 589.7 670 50.6
Ca_30995_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 1.4e-165 587.4 594 55.9
ECA246G2509 Erigeron canadensis HOM05D006413 ORTHO05D007722 3.1e-165 586.3 650 51.8
Lj9A544G35 Lonicera japonica HOM05D006413 ORTHO05D007722 2.0e-164 583.6 532 59.2
AUR62014504 Chenopodium quinoa HOM05D006413 ORTHO05D007722 5.9e-164 582.0 665 51.0
PSO782G4045 Papaver somniferum HOM05D006413 ORTHO05D007722 2.2e-163 580.1 609 53.5
HanXRQChr12g0379901 Helianthus annuus HOM05D006413 ORTHO05D007722 1.9e-162 577.0 654 52.4
BolC4t21760H Brassica oleracea HOM05D006413 ORTHO05D007722 2.5e-162 576.6 669 50.4
MBI12_g23070_MAGBIO Magnolia biondii HOM05D006413 ORTHO05D007722 7.2e-162 575.1 746 47.6
BcaC02g12635 Brassica carinata HOM05D006413 ORTHO05D007722 3.6e-161 572.8 626 52.1
Aa31LG1G28280 Aethionema arabicum HOM05D006413 ORTHO05D007722 6.1e-161 572.0 662 49.5
Ah.05g177080 Amaranthus hybridus HOM05D006413 ORTHO05D007722 1.0e-160 571.2 659 49.8
SGA_v2.0_scaffold12G06253 Striga asiatica HOM05D006413 ORTHO05D007722 5.7e-159 565.5 729 46.4
Sp4g28940 Schrenkiella parvula HOM05D006413 ORTHO05D007722 7.4e-159 565.1 656 51.1
FAN14G2652 Fragaria x ananassa HOM05D006413 ORTHO05D007722 1.4e-157 560.8 688 49.1
Migut.G00788 Erythranthe guttata HOM05D006413 ORTHO05D007722 2.6e-156 556.6 705 47.8
C04p01070 Brassica napus HOM05D006413 ORTHO05D007722 2.2e-155 553.5 666 48.8
AUR62038031 Chenopodium quinoa HOM05D006413 ORTHO05D007722 3.8e-155 552.7 698 47.9
A05p00920 Brassica napus HOM05D006413 ORTHO05D007722 1.6e-153 547.4 723 46.3
MSTRG.12126 Avicennia marina HOM05D006413 ORTHO05D007722 2.1e-153 547.0 664 48.5
CAN.G317.7 Capsicum annuum HOM05D006413 ORTHO05D007722 2.1e-153 547.0 656 49.1
Sopen03g012060 Solanum pennellii HOM05D006413 ORTHO05D007722 2.1e-153 547.0 709 48.0
PSO063G3388 Papaver somniferum HOM05D006413 ORTHO05D007722 6.1e-153 545.4 499 57.3
Os06g0104000 Oryza sativa ssp. japonica HOM05D006413 ORTHO05D007722 3.3e-151 539.7 697 46.9
SEGI_13405 Sequoiadendron giganteum HOM05D006413 ORTHO05D007722 2.2e-150 537.0 681 45.4
ATR0579G084 Amborella trichopoda HOM05D006413 ORTHO05D007722 8.2e-150 535.0 615 52.0
HPP92_025405 Vanilla planifolia HOM05D006413 ORTHO05D007722 6.5e-147 525.4 667 46.0
EL10Ac1g00655 Beta vulgaris HOM05D006413 ORTHO05D007722 5.2e-144 515.8 724 43.9
BraA05t19093Z Brassica rapa HOM05D006413 ORTHO05D007722 6.7e-144 515.4 635 48.7
Zm00001eb268520 Zea mays HOM05D006413 ORTHO05D007722 4.4e-143 512.7 730 43.8
Actinidia28080 Actinidia chinensis HOM05D006413 ORTHO05D007722 4.8e-142 509.2 573 51.8
PGR042G2300 Punica granatum HOM05D006413 ORTHO05D007722 6.3e-142 508.8 650 45.4
Nitab4.5_0000911g0040 Nicotiana tabacum HOM05D006413 ORTHO05D007722 3.2e-130 469.9 715 43.8
Pp3c4_17360 Physcomitrium patens HOM05D006413 ORTHO05D007722 4.4e-119 433.0 691 40.7
CiPaw.02G050700 Carya illinoinensis HOM05D006413 ORTHO05D007722 5.7e-119 432.6 436 55.3
Ciclev10020349m.g Citrus clementina HOM05D006413 ORTHO05D007722 1.0e-115 421.8 389 58.9
Dinv34265 Davidia involucrata HOM05D006413 ORTHO05D007722 1.7e-115 421.0 479 51.6
Mapoly0083s0051 Marchantia polymorpha HOM05D006413 ORTHO05D007722 7.5e-111 405.6 731 36.8
Hund26913 Selenicereus undatus HOM05D006413 ORTHO05D007722 2.5e-106 390.6 480 46.9
Nitab4.5_0000001g0010 Nicotiana tabacum HOM05D006413 ORTHO05D007722 2.1e-100 370.9 764 37.2
Psat2g176480 Pisum sativum HOM05D006413 ORTHO05D007722 3.0e-99 367.1 381 53.3
SMO358G0223 Selaginella moellendorffii HOM05D006413 ORTHO05D007722 5.6e-98 362.8 494 42.1
Oeu059793.1 Olea europaea HOM05D006413 ORTHO05D007722 1.6e-89 334.7 390 48.5
Glyma.19G019600 Glycine max HOM05D006413 ORTHO05D007722 1.8e-80 304.7 329 52.6
CDE12G0173 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 4.5e-79 300.1 345 50.4
vmacro12628 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 2.8e-65 254.2 557 35.4
MD05G1207200 Malus domestica HOM05D006413 ORTHO05D007722 4.8e-65 253.4 332 47.3
vmacro12630 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 1.6e-52 211.8 194 59.3
CiPaw.02G051000 Carya illinoinensis HOM05D006413 ORTHO05D007722 2.7e-52 211.1 155 71.6
CSS0011223 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 1.1e-50 205.7 158 64.6
CSS0044831 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 1.1e-50 205.7 155 69.7
CSS0048009 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.2e-49 201.4 155 68.4
PGSC0003DMG400005503 Solanum tuberosum HOM05D006413 ORTHO05D007722 2.7e-44 184.5 155 64.5
Hma1.2p1_0074F.1_g038950 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 2.3e-43 181.4 138 69.6
CDE12G0027 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 3.1e-40 171.0 262 45.4
Hund26914 Selenicereus undatus HOM05D006413 ORTHO05D007722 9.1e-40 169.5 258 45.7
Glyma.15G001000 Glycine max HOM05D006413 ORTHO05D007722 3.7e-33 147.5 97 77.3
ATR0579G174 Amborella trichopoda HOM05D006413 ORTHO05D007722 1.1e-29 136.0 260 34.6
Psat3g197040 Pisum sativum HOM05D006413 ORTHO05D007722 8.0e-28 129.8 140 46.4
CSS0016033 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.5e-21 108.2 67 79.1
CSS0017802 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.5e-21 108.2 67 79.1
CSS0033391 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 9.8e-18 96.3 181 35.4
CSS0026125 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 8.3e-17 93.2 181 34.8
Psat5g292640 Pisum sativum HOM05D006413 ORTHO05D007722 2.3e-14 85.1 79 57.0
Hma1.2p1_0074F.1_g038990 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 1.5e-13 82.4 83 53.0
CiPaw.02G050800 Carya illinoinensis HOM05D006413 ORTHO05D007722 3.0e-11 74.7 44 81.8
Solyc03g058437.1 Solanum lycopersicum HOM05D006413 ORTHO05D007722 5.2e-11 73.9 52 75.0
CSS0006840 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.0e-10 72.0 44 79.5
CSS0032487 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.0e-10 72.0 44 79.5
Cre17.g719876 Chlamydomonas reinhardtii HOM05D040268 ORTHO05D007722 2.2e-09 68.6 117 36.8
Cre17.g719771 Chlamydomonas reinhardtii HOM05D040268 ORTHO05D007722 3.7e-09 67.8 117 36.8
AagrBONN_evm.TU.Sc2ySwM_228.3599 Anthoceros agrestis HOM05D002735 ORTHO05D003048 8.3e-09 66.6 187 25.1
Aqoxy5G03066 Aquilegia oxysepala HOM05D002735 ORTHO05D003048 4.1e-08 64.3 191 26.7
TAR622G0674 Trochodendron aralioides HOM05D002735 ORTHO05D003048 1.6e-07 62.4 191 27.2
CAN.G904.24 Capsicum annuum HOM05D002735 ORTHO05D003048 3.5e-07 61.2 191 26.2
PGR142G4442 Punica granatum HOM05D002735 ORTHO05D003048 3.5e-07 61.2 170 28.2
Nn3g16255 Nelumbo nucifera HOM05D002735 ORTHO05D003048 4.5e-07 60.8 191 26.2
Manes.11G075900 Manihot esculenta HOM05D002735 ORTHO05D003048 5.9e-07 60.5 162 25.3
Cpa.g.sc70.57 Carica papaya HOM05D002735 ORTHO05D003048 1.7e-06 58.9 160 26.2
Nn4g22116 Nelumbo nucifera HOM05D002735 ORTHO05D003048 1.7e-06 58.9 191 24.6
vmacro12629 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 1.7e-06 58.9 41 65.9
Nitab4.5_0000923g0010 Nicotiana tabacum HOM05D002735 ORTHO05D003048 2.3e-06 58.5 164 26.2
Nitab4.5_0002209g0230 Nicotiana tabacum HOM05D002735 ORTHO05D003048 2.3e-06 58.5 164 26.2
Peaxi162Scf00573g00011 Petunia axillaris HOM05D002735 ORTHO05D003048 2.3e-06 58.5 164 25.6
PGSC0003DMG400021294 Solanum tuberosum HOM05D002735 ORTHO05D003048 2.3e-06 58.5 164 25.6
Cre07.g318350 Chlamydomonas reinhardtii HOM05D002735 ORTHO05D003048 2.9e-06 58.2 189 25.9
Eucgr.G01926 Eucalyptus grandis HOM05D002735 ORTHO05D003048 2.9e-06 58.2 170 26.5
Os01g0929000 Oryza sativa ssp. japonica HOM05D002735 ORTHO05D003048 2.9e-06 58.2 177 27.1
Solyc02g094560.3 Solanum lycopersicum HOM05D002735 ORTHO05D003048 2.9e-06 58.2 185 26.5
Sopen10g003470 Solanum pennellii HOM05D002735 ORTHO05D003048 2.9e-06 58.2 164 25.6
TWI32G0729 Tripterygium wilfordii HOM05D002735 ORTHO05D003048 2.9e-06 58.2 255 23.5
vmacro18385 Vaccinium macrocarpon HOM05D002735 ORTHO05D003048 2.9e-06 58.2 171 27.5
A02p02270 Brassica napus HOM05D002735 ORTHO05D003048 3.8e-06 57.8 167 25.1
Glyma.16G047400 Glycine max HOM05D002735 ORTHO05D003048 3.8e-06 57.8 191 26.2
MBI07_g13944_MAGBIO Magnolia biondii HOM05D002735 ORTHO05D003048 3.8e-06 57.8 168 26.2
C02p06500 Brassica napus HOM05D002735 ORTHO05D003048 5.0e-06 57.4 166 24.1
BolC2t06597H Brassica oleracea HOM05D002735 ORTHO05D003048 5.0e-06 57.4 166 24.1
CDE09G0079 Ceratophyllum demersum HOM05D002735 ORTHO05D003048 5.0e-06 57.4 177 26.6
FvH4_6g54352 Fragaria vesca HOM05D002735 ORTHO05D003048 5.0e-06 57.4 185 27.0
FAN02G1708 Fragaria x ananassa HOM05D002735 ORTHO05D003048 5.0e-06 57.4 185 27.0
Os11g0528400 Oryza sativa ssp. japonica HOM05D002735 ORTHO05D003048 5.0e-06 57.4 177 26.6
SMO118G0348 Selaginella moellendorffii HOM05D002735 ORTHO05D003048 5.0e-06 57.4 167 25.1
HPP92_003088 Vanilla planifolia HOM05D002735 ORTHO05D003048 5.0e-06 57.4 177 26.0
unitig_52.g17645 Utricularia gibba HOM05D002735 ORTHO05D003048 6.6e-06 57.0 160 24.4
Zm00001eb363720 Zea mays HOM05D002735 ORTHO05D003048 6.6e-06 57.0 181 27.1
Glyma.19G104300 Glycine max HOM05D002735 ORTHO05D003048 8.6e-06 56.6 191 26.2
MD09G1002100 Malus domestica HOM05D002735 ORTHO05D003048 8.6e-06 56.6 185 25.4


User provided reference genes

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