Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 3.1e-209 731.5 349 100.0
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 2.7e-165 585.5 346 82.4
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 3.7e-138 495.4 341 73.0
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 1.0e-127 460.7 331 71.6
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 6.1e-117 424.9 325 66.2
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 1.0e-111 407.5 325 62.8
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 2.3e-111 406.4 336 62.2
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 2.1e-109 399.8 341 61.3
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.8e-108 396.7 353 58.4
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 3.1e-108 396.0 332 60.5
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 9.8e-107 391.0 328 61.9
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 8.3e-106 387.9 275 67.3
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 7.0e-105 384.8 284 66.2
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 9.2e-105 384.4 323 60.4
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.2e-104 384.0 359 55.7
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 1.2e-104 384.0 329 58.7
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.6e-104 383.6 335 60.9
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 4.6e-104 382.1 316 60.1
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 1.3e-103 380.6 340 57.6
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 1.3e-103 380.6 277 65.3
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 3.9e-103 379.0 290 64.8
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 5.0e-103 378.6 270 66.7
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 5.0e-103 378.6 270 67.8
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 5.0e-103 378.6 326 62.3
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-102 377.5 285 62.1
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 1.9e-102 376.7 285 62.1
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 4.3e-102 375.6 323 59.4
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 1.6e-101 373.6 268 67.5
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.6e-101 372.5 267 67.0
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.3e-100 369.8 279 64.5
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.3e-98 364.0 268 66.8
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 6.4e-98 361.7 268 66.8
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.4e-97 360.5 272 64.7
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 4.1e-97 359.0 337 58.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 5.4e-97 358.6 268 66.4
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.2e-96 357.5 284 61.3
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.7e-96 356.3 285 61.1
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 2.3e-95 353.2 336 55.4
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 6.6e-95 351.7 274 61.7
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 1.1e-94 350.9 270 61.5
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.9e-94 350.1 270 61.5
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 5.6e-94 348.6 269 61.3
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 7.3e-94 348.2 285 60.4
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 2.1e-93 346.7 283 59.7
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 2.1e-93 346.7 270 60.4
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 2.8e-93 346.3 270 60.4
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 3.6e-93 345.9 273 63.0
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 4.7e-93 345.5 285 59.3
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 6.2e-93 345.1 288 60.1
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 8.1e-93 344.7 269 58.4
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.8e-92 343.6 283 59.4
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 3.4e-91 339.3 318 51.3
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 7.6e-91 338.2 274 57.7
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 7.6e-91 338.2 270 57.4
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 2.2e-90 336.7 264 61.7
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 2.9e-90 336.3 318 54.4
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 4.9e-90 335.5 286 58.4
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 8.4e-90 334.7 288 58.0
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 8.4e-90 334.7 288 58.0
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 1.4e-89 334.0 281 59.8
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 5.4e-89 332.0 299 55.9
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 5.4e-89 332.0 280 57.5
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 3.5e-88 329.3 336 50.0
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 6.0e-88 328.6 298 55.4
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.3e-87 327.4 284 57.7
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.7e-87 327.0 277 59.2
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.9e-87 325.9 253 62.1
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 8.6e-87 324.7 253 61.7
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 7.3e-86 321.6 329 53.2
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 9.6e-86 321.2 287 57.1
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.2e-85 320.9 253 60.9
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 2.1e-85 320.1 273 59.0
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 6.9e-84 315.1 276 54.0
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 9.0e-84 314.7 313 53.7
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.3e-77 294.3 290 52.1
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 4.0e-76 289.3 261 52.9
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 5.3e-76 288.9 223 61.0
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.1e-73 281.2 268 53.4
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 9.3e-73 278.1 304 50.0
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 2.7e-72 276.6 297 50.8
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.3e-69 267.7 271 50.2
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 2.1e-64 250.4 232 53.9
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 3.4e-59 233.0 269 47.6
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 5.5e-57 225.7 280 44.3
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 7.4e-54 215.3 147 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 1.3e-53 214.5 269 41.6
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 2.2e-50 203.8 226 49.1
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 4.2e-49 199.5 199 50.8
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 1.6e-48 197.6 275 38.9
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.3e-47 194.5 133 69.9
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.2e-40 171.4 106 68.9
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 9.7e-38 161.8 281 34.5
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 2.6e-35 153.7 110 61.8
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.3e-34 151.4 135 57.8
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 3.6e-32 143.3 81 72.8
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 3.7e-29 133.3 80 76.2
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.8e-23 114.4 83 60.2
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 5.2e-23 112.8 308 27.9
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 1.1e-20 105.1 67 67.2
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 4.2e-17 93.2 67 68.7
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 4.2e-17 93.2 67 68.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 7.2e-17 92.4 50 74.0
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 7.2e-17 92.4 50 74.0
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 9.4e-17 92.0 72 63.9
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-12 78.6 58 60.3
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-12 78.6 58 60.3
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 4.1e-12 76.6 63 52.4
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.0e-11 74.3 53 66.0
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 9.5e-09 65.5 43 60.5
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 9.5e-09 65.5 60 46.7
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 1.4e-07 61.6 32 81.2
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 3.4e-06 57.0 42 54.8
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 4.4e-06 56.6 46 50.0


User provided reference genes

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