Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1744.9 979 100.0
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1537.3 1026 86.1
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1529.6 1005 85.5
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1435.6 1006 79.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1398.3 1003 77.6
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1093.6 1059 63.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1092.0 1070 62.1
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 6.6e-310 1067.4 1067 60.6
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 3.6e-308 1061.6 1061 62.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.4e-304 1049.7 1040 60.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.2e-303 1046.6 1032 62.5
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.0e-303 1044.3 1016 62.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.3e-302 1042.3 1028 62.3
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 3.9e-302 1041.6 1055 60.3
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.3e-300 1036.6 1025 60.5
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.1e-300 1035.8 1025 60.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1016 63.1
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.4e-298 1028.1 1037 61.2
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 2.9e-297 1025.4 1055 58.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 6.4e-297 1024.2 1038 61.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 6.4e-297 1024.2 1046 61.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 2.5e-293 1012.3 1068 56.9
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 6.2e-292 1007.7 1020 61.1
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 7.6e-290 1000.7 1020 58.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 7.6e-290 1000.7 1020 60.7
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.2e-289 999.2 1039 58.8
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.4e-288 996.5 983 60.6
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.2e-288 995.3 1026 60.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.2e-288 995.0 1197 55.2
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 7.1e-288 994.2 1027 57.7
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 4.6e-287 991.5 1026 58.9
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.9e-286 988.4 1024 57.6
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 3.9e-286 988.4 1090 56.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 7.4e-285 984.2 1033 57.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.8e-284 981.5 1029 58.1
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 6.2e-284 981.1 1057 58.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 8.1e-284 980.7 1055 58.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 8.1e-284 980.7 1033 57.6
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 5.3e-283 978.0 1076 56.8
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.0e-282 976.1 1038 58.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 5.8e-282 974.5 1011 56.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 5.8e-282 974.5 1042 56.6
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.7e-281 973.0 1047 57.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 4.9e-281 971.5 1035 57.4
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.9e-277 959.5 999 57.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.9e-277 959.5 1033 56.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.5e-277 959.1 1064 55.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 8.2e-276 954.1 1012 56.5
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.4e-275 952.6 1018 57.0
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 5.3e-275 951.4 1000 61.1
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 4.5e-274 948.3 1010 56.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.3e-273 946.8 1008 58.5
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.5e-273 944.5 1049 57.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.2e-272 941.8 1026 58.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 5.5e-272 941.4 1064 56.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.7e-271 939.1 1000 58.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.5e-271 938.7 1026 58.5
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.3e-270 936.8 1063 55.1
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 8.7e-270 934.1 997 57.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 3.3e-269 932.2 1066 56.7
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.4e-269 931.0 1016 55.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 4.8e-268 928.3 1091 54.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 6.9e-267 924.5 860 63.1
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.0e-267 924.1 1013 55.2
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.1e-264 917.1 986 56.2
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 2.5e-264 916.0 1034 54.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.2e-264 915.2 1027 55.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.6e-263 913.3 1022 55.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.1e-263 912.9 910 58.2
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.3e-262 909.4 1026 54.9
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.3e-262 909.4 1022 54.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 3.9e-262 908.7 1021 54.0
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.8e-260 902.5 1030 54.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 6.9e-259 897.9 988 57.3
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.5e-258 896.7 997 56.9
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.5e-258 896.7 966 58.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 2.6e-258 896.0 1012 56.4
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.7e-257 893.3 1052 51.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.7e-257 893.3 1065 53.9
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.6e-255 886.7 1036 50.9
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.7e-255 885.9 1013 55.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 7.9e-255 884.4 1022 54.6
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.7e-253 878.2 992 56.4
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 5.7e-253 878.2 918 58.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 4.5e-250 868.6 865 57.9
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.9e-248 863.2 1020 54.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.1e-245 854.0 1029 52.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.9e-241 839.3 874 57.8
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 4.2e-240 835.5 1043 50.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.7e-239 832.0 1026 51.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.8e-238 830.1 1029 51.2
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.3e-228 797.3 1028 48.7
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.8e-228 796.2 839 55.5
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.8e-227 793.5 851 57.2
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.5e-221 771.5 1057 49.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.6e-215 753.8 1038 47.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 5.2e-214 748.8 1018 49.0
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.2e-207 727.6 1064 46.1
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.9e-204 715.7 814 53.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.3e-192 675.2 709 59.1
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.2e-187 659.4 572 64.7
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.1e-183 647.1 613 61.3
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-174 618.2 966 43.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.1e-174 616.7 615 58.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.7e-172 610.9 1025 42.0
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-166 591.7 848 48.7
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.6e-162 577.8 1157 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.5e-162 576.6 1096 38.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 5.7e-160 569.3 498 66.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.4e-158 563.9 1023 39.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 5.7e-152 542.7 513 61.8
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.2e-140 504.2 714 50.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.2e-130 471.9 906 38.2
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.3e-128 463.8 565 52.7
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.3e-124 451.8 909 35.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.5e-123 448.4 634 43.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.0e-101 374.8 360 59.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.7e-98 363.6 351 58.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.2e-86 322.8 389 51.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 7.3e-83 313.2 1109 31.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.7e-76 292.0 596 38.1
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 9.0e-73 279.6 558 40.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 5.8e-64 250.4 858 33.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.9e-55 221.5 227 59.9
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.7e-53 214.9 262 53.4
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 5.1e-52 210.7 737 27.5
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 3.8e-31 141.4 181 47.0
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 5.5e-30 137.5 200 54.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 3.6e-29 134.8 224 45.5
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 6.7e-28 130.6 132 57.6
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.4e-27 127.9 185 42.2
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 5.7e-27 127.5 155 51.6
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.4e-25 122.9 140 55.7
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.7e-23 115.9 209 43.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 8.0e-21 107.1 92 66.3
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.7e-20 104.0 58 82.8
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 6.7e-20 104.0 79 63.3
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.1e-19 103.2 51 96.1
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.2e-18 97.1 99 52.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 2.1e-13 82.4 75 58.7
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.8e-10 72.0 122 40.2
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 5.9e-08 64.3 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 5.9e-08 64.3 45 64.4
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 5.9e-08 64.3 38 78.9
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.3e-07 63.2 45 62.2


User provided reference genes

Program Settings