Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1931.0 1004 100.0
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1845.9 1004 95.3
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1841.2 1004 94.9
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1771.5 1004 91.1
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1542.7 1004 78.7
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1522.7 1004 77.5
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1517.7 1004 77.5
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1510.7 1004 77.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1499.6 1004 76.6
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1492.2 1007 75.8
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1489.6 1004 75.8
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1487.2 1004 75.7
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1485.3 1004 75.9
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1484.2 1004 74.8
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1482.2 1004 75.7
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1475.3 1007 74.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1474.5 1004 74.8
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1474.5 983 76.5
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1472.6 1006 74.8
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 993 75.1
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 1005 74.3
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1464.5 1004 74.0
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1463.7 993 74.8
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1462.6 1005 74.2
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1462.2 1004 74.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1460.3 1004 73.8
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 1004 75.4
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1456.0 1004 74.6
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 1004 72.9
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1454.9 1009 73.5
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1453.7 1004 75.4
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1438.7 1001 72.4
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1436.4 1005 73.4
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1433.7 1006 73.2
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 1004 73.3
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 1004 73.2
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 1004 73.8
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1427.9 1004 73.7
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1427.9 1006 73.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1424.5 1005 72.2
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1424.5 1007 72.7
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1424.1 1004 71.9
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1423.7 1005 72.3
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1421.8 1004 71.9
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 1005 72.1
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 1006 73.3
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1419.1 1004 72.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 1006 71.8
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1415.6 1029 71.6
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1414.1 1006 71.8
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 1006 72.6
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 1088 68.2
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1408.7 1007 72.9
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1407.1 1004 71.5
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 1008 71.8
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 1004 71.1
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 977 73.3
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1401.7 999 72.0
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1401.7 983 73.2
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 1007 71.6
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1395.9 1004 71.0
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1390.6 1004 70.3
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1380.9 974 72.0
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 1004 69.6
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 976 73.3
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1374.8 1004 69.5
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1373.6 1006 70.7
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1371.7 1009 69.6
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1369.4 1006 72.0
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1368.6 1004 71.2
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 1005 69.2
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1365.9 1004 70.6
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1364.4 1007 69.8
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 932 74.8
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1360.5 1004 70.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1358.2 1011 70.4
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 976 72.0
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1345.1 1004 68.5
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1344.7 1004 68.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1339.3 910 74.6
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1339.3 1004 68.4
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1333.5 1006 69.1
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 992 69.5
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 992 69.5
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1324.7 1004 68.0
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 1018 66.9
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1318.1 1006 66.8
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 1007 68.9
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1317.4 1005 67.1
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1314.7 1006 66.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 1006 67.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1307.7 1006 66.8
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1306.6 1006 68.4
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1300.4 1036 65.6
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1288.5 1012 66.4
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1276.9 1004 67.1
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1254.6 927 70.7
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1246.5 985 64.9
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1242.3 977 66.2
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1177.9 876 70.9
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1177.2 926 67.9
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1164.4 1005 59.3
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1134.0 1012 60.8
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.5e-301 1039.6 738 73.4
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.1e-288 996.9 926 59.9
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.1e-287 992.6 1006 52.6
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.7e-284 983.0 1015 52.6
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 3.7e-284 981.9 1015 52.6
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.9e-275 953.0 1016 51.8
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 2.4e-275 952.6 1013 49.7
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.3e-271 940.3 626 76.7
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 7.1e-267 924.5 611 77.1
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 7.1e-267 924.5 1009 48.7
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.3e-260 903.7 856 57.2
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.1e-254 882.5 757 61.0
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 9.0e-254 880.9 608 73.0
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 2.4e-246 856.3 997 45.9
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.3e-241 840.5 813 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 2.4e-206 723.4 927 43.8
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.0e-205 720.3 1096 38.2
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 7.1e-174 615.5 428 72.9
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 4.3e-147 526.6 328 79.9
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 2.6e-144 517.3 317 80.8
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 2.5e-139 500.7 369 69.1
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.3e-119 435.3 1196 28.8
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.0e-84 317.4 264 59.8
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.0e-84 317.4 264 59.8
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.6e-69 268.9 1078 26.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.4e-49 200.7 243 46.5
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.0e-39 169.9 935 22.9
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.1e-28 133.3 158 50.0
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 4.0e-28 131.3 122 59.8
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.6e-24 119.4 157 47.1
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 2.8e-21 108.6 98 60.2
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.6e-19 102.1 109 47.7
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.9e-16 90.5 96 51.0
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 8.8e-07 60.5 49 59.2


User provided reference genes

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