Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.1e-31 139.8 93 100.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.3e-26 122.9 93 87.1
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.6e-24 114.8 93 87.1
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.7e-24 114.4 93 83.9
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.2e-16 89.7 93 57.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.8e-16 88.6 92 68.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 3.6e-16 88.2 92 67.4
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.2e-16 87.4 92 69.6
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.1e-16 87.0 92 68.5
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.1e-15 86.7 89 71.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.1e-15 86.7 84 78.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.4e-15 86.3 89 71.9
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 6.8e-15 84.0 87 75.9
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 8.9e-15 83.6 82 70.7
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.2e-14 83.2 89 71.9
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.5e-14 82.8 89 70.8
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.0e-14 82.4 88 71.6
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 2.6e-14 82.0 92 71.7
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 4.4e-14 81.3 89 69.7
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 7.6e-14 80.5 89 69.7
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 7.6e-14 80.5 89 67.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 9.9e-14 80.1 87 70.1
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-13 79.7 91 69.2
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-13 79.7 77 70.1
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-13 79.3 77 74.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.7e-13 79.3 87 74.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-13 79.0 91 64.8
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-13 79.0 91 64.8
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.9e-13 78.6 92 63.0
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.9e-13 78.6 89 68.5
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.8e-13 78.2 89 68.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.4e-13 77.4 89 68.5
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 6.4e-13 77.4 89 66.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 6.4e-13 77.4 92 68.5
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 8.4e-13 77.0 87 69.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 8.4e-13 77.0 89 71.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.1e-12 76.6 92 63.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.9e-12 75.9 87 69.0
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.9e-12 75.9 87 71.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.4e-12 75.5 90 65.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.4e-12 75.5 93 66.7
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 4.2e-12 74.7 86 65.1
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.4e-12 74.3 81 69.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 7.1e-12 73.9 91 62.6
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-11 73.2 93 62.4
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.6e-11 72.8 85 69.4
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.6e-11 72.8 78 67.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.6e-11 72.8 93 62.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.1e-11 72.4 74 70.3
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.1e-11 72.4 87 66.7
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.1e-11 72.4 87 69.0
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.7e-11 72.0 90 62.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.7e-11 72.0 79 48.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.8e-11 70.5 91 67.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.8e-11 70.5 93 47.3
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.0e-10 70.1 92 66.3
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.3e-10 69.7 46 69.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.3e-10 69.7 92 60.9
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.3e-10 69.7 91 63.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.7e-10 69.3 90 62.2
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.3e-10 68.9 90 56.7
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.3e-10 68.9 84 65.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.3e-10 68.9 79 69.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.0e-10 68.6 80 60.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.0e-10 68.6 79 67.1
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.9e-10 68.2 89 64.0
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.9e-10 68.2 88 65.9
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 3.9e-10 68.2 92 59.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 5.1e-10 67.8 89 65.2
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.1e-10 67.8 83 63.9
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.1e-10 67.8 81 69.1
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 5.1e-10 67.8 81 67.9
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.6e-10 67.4 87 64.4
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 8.7e-10 67.0 90 58.9
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 8.7e-10 67.0 75 68.0
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 8.7e-10 67.0 89 62.9
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 8.7e-10 67.0 89 62.9
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 8.7e-10 67.0 97 59.8
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 8.7e-10 67.0 89 67.4
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.1e-09 66.6 78 65.4
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.5e-09 65.5 88 62.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.5e-09 65.5 81 67.9
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 2.5e-09 65.5 54 63.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 4.3e-09 64.7 90 61.1
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 5.6e-09 64.3 76 64.5
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 5.6e-09 64.3 94 43.6
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.6e-09 64.3 53 56.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.6e-09 64.3 78 66.7
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.6e-09 63.5 90 60.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-08 62.8 90 62.2
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.1e-08 62.4 73 63.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.1e-08 62.4 82 42.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-08 62.0 90 61.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 2.8e-08 62.0 46 63.0
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.6e-08 61.6 77 66.2
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.8e-08 61.2 79 65.8
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.8e-08 61.2 92 40.2
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.8e-08 61.2 78 67.9
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 6.2e-08 60.8 76 43.4
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.2e-08 60.8 74 64.9
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 8.1e-08 60.5 47 66.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-07 60.1 90 57.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.1e-07 60.1 75 61.3
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.4e-07 59.7 50 60.0
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.8e-07 59.3 84 42.9
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.8e-07 59.3 59 54.2
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 3.1e-07 58.5 80 60.0
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.1e-07 58.5 79 60.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.1e-07 58.5 65 44.6
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 3.1e-07 58.5 86 39.5
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.1e-07 58.5 90 58.9
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.0e-07 58.2 90 56.7
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 5.3e-07 57.8 83 37.3
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 6.9e-07 57.4 88 42.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 6.9e-07 57.4 90 58.9
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-07 57.4 90 58.9
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.2e-06 56.6 88 44.3
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.5e-06 56.2 58 53.4
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.5e-06 56.2 46 63.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.0e-06 55.8 48 62.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.0e-06 55.8 89 58.4
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.6e-06 55.5 92 58.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.6e-06 55.5 79 39.2
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.6e-06 55.5 82 63.4
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.4e-06 55.1 74 56.8
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.4e-06 54.7 80 61.2
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 4.4e-06 54.7 86 41.9
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 4.4e-06 54.7 90 55.6
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.8e-06 54.3 51 58.8
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 7.6e-06 53.9 52 55.8
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 7.6e-06 53.9 52 55.8
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 7.6e-06 53.9 52 55.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 7.6e-06 53.9 91 41.8
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 9.9e-06 53.5 48 54.2


User provided reference genes

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