Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 0.0e+00 1253.4 632 100.0
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 0.0e+00 1179.9 660 91.2
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 0.0e+00 1114.4 660 86.2
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 7.1e-273 943.7 659 72.7
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 4.6e-272 941.0 654 72.9
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.3e-270 934.9 655 71.8
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.9e-265 919.1 660 70.6
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 2.5e-265 918.7 660 71.1
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 7.1e-265 917.1 660 70.8
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 2.7e-264 915.2 662 70.7
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 7.9e-264 913.7 663 71.2
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.1e-263 911.0 662 70.4
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 2.5e-262 908.7 656 70.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.3e-262 908.3 662 70.4
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.6e-261 906.0 646 70.0
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 6.3e-261 904.0 652 69.6
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 2.4e-260 902.1 659 68.6
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 2.6e-259 898.7 656 68.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.0e-258 896.7 652 69.5
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 3.8e-258 894.8 647 70.3
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 3.8e-258 894.8 660 68.3
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.5e-258 893.6 652 68.9
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.9e-257 892.5 649 69.0
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 4.2e-257 891.3 660 68.0
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 4.2e-257 891.3 649 70.7
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 9.3e-257 890.2 651 68.0
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.2e-256 889.8 660 68.2
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.1e-256 889.0 655 68.1
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 4.6e-256 887.9 670 68.2
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 6.1e-256 887.5 655 67.9
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 6.7e-255 884.0 655 67.9
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.3e-253 879.8 647 67.9
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.2e-253 879.0 649 69.3
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 2.2e-253 879.0 656 67.7
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 5.3e-252 874.4 647 69.4
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.2e-251 873.2 656 66.9
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 4.5e-251 871.3 658 67.6
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 6.5e-250 867.5 656 67.2
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.5e-249 865.5 651 67.1
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.0e-247 860.1 658 66.4
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 2.0e-243 845.9 648 66.0
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 2.9e-242 842.0 645 66.7
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.2e-241 838.6 645 65.9
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 4.7e-240 834.7 613 68.5
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 3.0e-239 832.0 644 66.8
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.4e-236 822.4 663 63.8
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 5.3e-236 821.2 652 64.6
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.2e-235 820.1 659 63.7
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.5e-235 818.5 642 65.1
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.5e-235 818.1 580 70.9
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.7e-234 816.2 580 74.8
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.5e-233 813.1 642 64.2
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.5e-233 813.1 642 64.2
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 7.2e-233 810.8 642 64.0
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 9.4e-233 810.4 646 63.6
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 1.6e-232 809.7 640 64.8
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 2.7e-232 808.9 642 64.2
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 2.7e-232 808.9 658 63.1
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 3.6e-232 808.5 642 64.0
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 6.1e-232 807.7 642 64.2
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 1.8e-231 806.2 642 64.6
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 2.3e-231 805.8 642 64.3
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.0e-231 805.4 655 63.4
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 5.2e-231 804.7 653 63.1
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 5.2e-231 804.7 648 63.7
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.2e-230 803.5 642 63.9
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.3e-229 800.0 656 63.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.2e-229 799.3 663 62.4
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 2.8e-229 798.9 656 63.4
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.4e-228 796.6 656 63.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 7.0e-228 794.3 610 65.9
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-226 790.0 654 61.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.9e-226 788.9 654 61.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 6.5e-226 787.7 634 63.4
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 1.2e-224 783.5 661 62.0
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 8.0e-224 780.8 642 63.1
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.4e-223 780.0 633 63.3
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.0e-223 778.9 663 60.8
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.2e-222 776.9 634 63.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.4e-220 770.0 639 62.8
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 2.0e-219 766.1 641 62.1
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.2e-218 762.7 660 61.5
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.9e-217 759.6 641 62.1
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 5.4e-212 741.5 648 61.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 2.3e-210 736.1 679 57.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 6.6e-210 734.6 657 59.2
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 4.7e-208 728.4 648 58.8
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.0e-207 727.2 556 64.6
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 8.9e-207 724.2 654 59.3
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 5.7e-206 721.5 525 68.8
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.9e-186 655.6 545 61.7
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.5e-185 653.7 604 58.6
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 4.3e-185 652.1 645 55.2
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 3.1e-183 646.0 661 54.9
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 5.2e-183 645.2 633 55.6
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.5e-182 643.7 648 55.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.7e-165 587.0 622 52.1
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 3.4e-158 562.8 442 64.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 9.3e-156 554.7 497 57.5
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.8e-152 543.1 657 46.6
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.2e-147 527.7 644 44.3
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 3.1e-143 513.1 662 41.8
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.1e-135 488.0 646 45.5
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.9e-132 477.2 648 39.8
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 2.1e-107 394.0 626 35.8
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.9e-92 344.4 328 56.4
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.6e-84 316.2 227 66.5
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 6.0e-46 189.9 156 59.6
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.9e-45 187.2 287 38.3
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 8.7e-45 186.0 147 63.3
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.3e-40 172.2 153 56.9
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.5e-39 166.8 155 56.1
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.0e-38 163.3 155 52.9
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.3e-37 162.2 172 51.2
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.3e-37 162.2 237 38.8
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.9e-36 158.3 121 66.1
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 9.6e-36 156.0 287 38.0
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.1e-34 151.0 199 46.7
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 6.7e-29 133.3 107 63.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 5.7e-28 130.2 107 62.6
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 9.7e-28 129.4 101 62.4
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 2.2e-27 128.3 110 64.5
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.0e-24 119.4 80 71.2
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 8.5e-24 116.3 79 70.9
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 4.6e-22 110.5 94 62.8
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.9e-21 107.5 83 66.3
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 7.4e-20 103.2 77 66.2
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 3.1e-18 97.8 85 58.8
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.5e-17 95.5 85 57.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.2e-14 85.9 56 71.4
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.1e-14 85.1 48 79.2
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.9e-13 80.9 535 23.0
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.5e-12 79.0 89 46.1
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 2.4e-10 71.6 185 30.8
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-07 62.4 74 50.0


User provided reference genes

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