Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.1e-51 206.5 109 100.0
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 4.0e-38 161.4 102 84.3
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 8.0e-23 110.5 109 61.5
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 8.0e-23 110.5 109 61.5
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.3e-22 109.0 109 61.5
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 2.3e-22 109.0 109 59.6
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 3.0e-22 108.6 109 60.6
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 3.0e-22 108.6 109 60.6
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 2.0e-21 105.9 109 60.6
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.6e-21 105.5 109 58.7
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 2.6e-21 105.5 110 60.9
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 3.4e-21 105.1 109 58.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 5.7e-21 104.4 109 59.6
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 9.8e-21 103.6 109 57.8
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.7e-20 102.8 110 59.1
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.2e-20 102.4 109 56.0
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 3.7e-20 101.7 107 57.9
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.7e-20 101.7 110 59.1
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 8.3e-20 100.5 111 59.5
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 4.1e-19 98.2 109 56.9
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 9.2e-19 97.1 110 60.0
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.7e-18 95.5 112 57.1
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.7e-18 95.5 109 55.0
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 2.7e-18 95.5 110 59.1
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 4.5e-18 94.7 110 54.5
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 5.9e-18 94.4 109 54.1
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 7.8e-18 94.0 113 57.5
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.3e-17 93.2 105 57.1
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.7e-17 92.8 105 54.3
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 5.0e-17 91.3 110 58.2
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.9e-16 89.4 109 55.0
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 2.5e-16 89.0 110 57.3
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 7.3e-16 87.4 99 55.6
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 7.3e-16 87.4 110 56.4
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 7.3e-16 87.4 116 52.6
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 9.5e-16 87.0 110 57.3
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 9.5e-16 87.0 103 53.4
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.6e-15 86.3 109 53.2
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 3.6e-15 85.1 110 54.5
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 3.6e-15 85.1 110 53.6
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 3.6e-15 85.1 103 55.3
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 4.7e-15 84.7 110 54.5
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 6.1e-15 84.3 109 53.2
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 8.0e-15 84.0 109 53.2
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 8.0e-15 84.0 106 51.9
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.0e-14 83.6 112 53.6
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.4e-14 83.2 110 53.6
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 2.3e-14 82.4 103 54.4
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.3e-14 82.4 85 60.0
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 4.0e-14 81.6 110 54.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 5.2e-14 81.3 103 53.4
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 5.2e-14 81.3 111 54.1
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 2.6e-13 79.0 112 52.7
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 3.4e-13 78.6 96 56.2
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 5.8e-13 77.8 97 56.7
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 5.8e-13 77.8 97 56.7
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 5.8e-13 77.8 111 47.7
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 2.2e-12 75.9 104 47.1
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.7e-12 75.1 93 54.8
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 4.9e-12 74.7 95 54.7
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 8.3e-12 73.9 105 50.5
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.1e-11 73.6 98 49.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 1.4e-11 73.2 109 48.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 2.4e-11 72.4 95 53.7
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 2.4e-11 72.4 107 48.6
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.4e-11 72.4 108 48.1
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 4.1e-11 71.6 98 51.0
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 4.1e-11 71.6 98 51.0
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.6e-10 69.7 81 58.0
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.6e-10 69.7 111 50.5
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 1.6e-10 69.7 105 49.5
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 2.0e-10 69.3 110 49.1
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.0e-10 69.3 105 46.7
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.0e-10 69.3 47 76.6
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 2.7e-10 68.9 98 49.0
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 3.5e-10 68.6 100 48.0
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 6.0e-10 67.8 47 76.6
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 7.8e-10 67.4 87 52.9
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.0e-09 67.0 99 49.5
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 1.7e-09 66.2 100 44.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 2.3e-09 65.9 108 49.1
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 2.3e-09 65.9 100 44.0
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.6e-09 63.9 103 44.7
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.6e-09 63.9 107 47.7
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 8.6e-09 63.9 97 49.5
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 8.6e-09 63.9 44 75.0
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 1.9e-08 62.8 96 45.8
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.9e-08 62.8 87 49.4
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 2.5e-08 62.4 106 44.3
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.3e-08 62.0 89 49.4
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.3e-08 62.0 74 50.0
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 5.6e-08 61.2 108 46.3
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 5.6e-08 61.2 105 46.7
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 9.5e-08 60.5 96 43.8
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 1.6e-07 59.7 104 45.2
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 3.6e-07 58.5 106 45.3
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 8.0e-07 57.4 61 57.4
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.1e-06 57.0 61 50.8
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 1.4e-06 56.6 104 40.4
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.8e-06 56.2 67 47.8
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 2.3e-06 55.8 60 51.7
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 2.3e-06 55.8 47 59.6
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.3e-06 55.8 88 48.9
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 3.1e-06 55.5 98 41.8
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.0e-06 55.1 47 57.4
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 4.0e-06 55.1 69 53.6
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 4.0e-06 55.1 102 45.1
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 5.2e-06 54.7 107 44.9
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 5.2e-06 54.7 88 44.3
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 8.9e-06 53.9 105 38.1


User provided reference genes

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