Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 5.0e-129 464.5 252 100.0
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 8.2e-79 297.7 259 65.3
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.2e-66 257.3 263 62.7
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 1.2e-45 187.6 261 47.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 4.7e-26 122.5 196 39.8
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 2.3e-25 120.2 196 38.3
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.4e-24 116.3 198 37.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 4.4e-24 115.9 252 34.1
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 9.8e-24 114.8 204 36.8
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.8e-24 114.8 198 37.4
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.8e-24 114.8 198 37.4
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 2.2e-23 113.6 136 41.2
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 4.9e-23 112.5 194 35.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 4.9e-23 112.5 209 36.4
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 8.3e-23 111.7 197 35.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.4e-22 110.2 198 36.4
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 3.2e-22 109.8 188 36.2
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 9.2e-22 108.2 207 35.7
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.2e-21 107.8 195 36.4
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 2.0e-21 107.1 202 34.2
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 2.7e-21 106.7 197 35.5
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 2.7e-21 106.7 197 33.5
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 6.0e-21 105.5 196 33.7
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 6.0e-21 105.5 204 34.8
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 1.0e-20 104.8 212 35.4
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.3e-20 104.4 206 34.5
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 1.3e-20 104.4 201 35.8
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.3e-20 103.6 194 35.1
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.3e-20 103.6 207 34.3
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.9e-20 102.8 189 34.4
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 3.9e-20 102.8 206 34.5
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.5e-19 100.9 229 32.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.9e-19 100.5 205 31.2
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.5e-19 100.1 191 35.6
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.3e-19 99.8 212 31.6
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 4.3e-19 99.4 135 43.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 5.6e-19 99.0 190 33.7
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 5.6e-19 99.0 193 34.2
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 7.3e-19 98.6 206 31.1
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 7.3e-19 98.6 217 30.0
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 9.5e-19 98.2 200 33.5
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 9.5e-19 98.2 100 46.0
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.2e-18 97.8 195 32.3
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 4.7e-18 95.9 199 31.2
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 4.7e-18 95.9 119 42.0
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 8.0e-18 95.1 143 37.8
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 1.8e-17 94.0 80 51.2
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.1e-17 93.2 207 29.5
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 5.2e-17 92.4 215 31.2
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 1.2e-16 91.3 194 33.5
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 7.5e-16 88.6 135 39.3
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.7e-15 87.4 195 30.8
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 1.7e-15 87.4 228 27.6
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 3.7e-15 86.3 166 33.7
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 6.4e-15 85.5 197 30.5
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 8.3e-15 85.1 117 41.0
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.4e-14 84.3 82 47.6
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.9e-14 84.0 98 43.9
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 2.4e-14 83.6 94 42.6
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 5.4e-14 82.4 84 42.9
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 9.2e-14 81.6 97 38.1
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 9.2e-14 81.6 103 37.9
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 9.2e-14 81.6 139 33.8
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-13 81.3 132 39.4
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.6e-13 80.9 71 45.1
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 2.1e-13 80.5 84 41.7
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.7e-13 80.1 132 38.6
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.7e-13 80.1 71 45.1
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 3.5e-13 79.7 98 42.9
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 6.0e-13 79.0 96 39.6
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.0e-13 79.0 132 38.6
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.0e-12 78.2 95 40.0
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.0e-12 78.2 147 32.7
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.7e-12 77.4 78 46.2
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 2.3e-12 77.0 132 37.9
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 2.3e-12 77.0 78 42.3
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.0e-12 76.6 71 42.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.0e-12 76.6 132 37.9
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.9e-12 76.3 80 42.5
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 5.1e-12 75.9 97 41.2
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 5.1e-12 75.9 189 28.6
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 5.1e-12 75.9 189 28.6
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 1.1e-11 74.7 132 37.9
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.5e-11 74.3 116 35.3
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.5e-11 74.3 152 30.3
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.9e-11 73.9 110 33.6
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.9e-11 73.9 80 37.5
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.9e-11 73.9 100 41.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 3.3e-11 73.2 99 41.4
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 3.3e-11 73.2 143 30.8
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.3e-11 72.8 71 40.8
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 4.3e-11 72.8 92 39.1
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 4.3e-11 72.8 92 39.1
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 7.3e-11 72.0 71 43.7
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 7.3e-11 72.0 81 44.4
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 9.5e-11 71.6 71 43.7
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 9.5e-11 71.6 100 40.0
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.2e-10 71.2 98 34.7
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 1.2e-10 71.2 86 38.4
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 1.6e-10 70.9 84 36.9
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 1.6e-10 70.9 71 43.7
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 2.1e-10 70.5 71 43.7
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.8e-10 70.1 71 42.3
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.8e-10 70.1 76 38.2
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.1e-09 68.2 75 45.3
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.1e-09 68.2 100 38.0
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.8e-09 67.4 97 38.1
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.3e-09 67.0 78 41.0
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.3e-09 67.0 81 39.5
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.3e-09 67.0 152 31.6
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 2.3e-09 67.0 70 41.4
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 2.3e-09 67.0 70 40.0
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.1e-09 66.6 152 30.3
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 3.1e-09 66.6 70 41.4
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.0e-09 66.2 71 39.4
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 4.0e-09 66.2 71 39.4
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 4.0e-09 66.2 84 40.5
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.2e-09 65.9 94 35.1
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 5.2e-09 65.9 70 35.7
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 5.2e-09 65.9 80 36.2
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 8.9e-09 65.1 79 38.0
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.2e-08 64.7 71 32.4
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 2.0e-08 63.9 70 38.6
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 2.0e-08 63.9 71 39.4
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.0e-08 63.9 82 39.0
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 2.0e-08 63.9 85 38.8
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.0e-08 63.9 85 38.8
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 2.0e-08 63.9 82 34.1
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 3.4e-08 63.2 104 34.6
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 3.4e-08 63.2 78 39.7
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 4.4e-08 62.8 156 28.2
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.4e-08 62.8 99 34.3
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 5.8e-08 62.4 86 34.9
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 7.6e-08 62.0 78 35.9
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.3e-07 61.2 78 35.9
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.7e-07 60.8 84 35.7
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.7e-07 60.8 72 41.7
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.7e-07 60.8 72 41.7
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.7e-07 60.8 72 41.7
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.7e-07 60.8 151 28.5
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.7e-07 60.8 126 32.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 1.7e-07 60.8 80 31.2
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 1.7e-07 60.8 103 36.9
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 2.2e-07 60.5 75 40.0
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 2.2e-07 60.5 107 32.7
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 2.2e-07 60.5 98 33.7
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 2.9e-07 60.1 72 38.9
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 3.7e-07 59.7 128 28.1
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 6.4e-07 58.9 74 35.1
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 6.4e-07 58.9 119 28.6
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 6.4e-07 58.9 119 28.6
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 6.4e-07 58.9 140 30.0
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 6.4e-07 58.9 111 32.4
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 8.3e-07 58.5 84 34.5
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 1.1e-06 58.2 77 39.0
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.4e-06 57.8 82 35.4
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 1.4e-06 57.8 56 42.9
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 1.9e-06 57.4 86 33.7
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.9e-06 57.4 82 35.4
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 2.4e-06 57.0 76 35.5
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 2.4e-06 57.0 112 27.7
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 2.4e-06 57.0 76 38.2
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 4.1e-06 56.2 119 27.7
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 4.1e-06 56.2 88 29.5
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 7.1e-06 55.5 76 34.2
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 7.1e-06 55.5 121 29.8
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 9.2e-06 55.1 76 34.2


User provided reference genes

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