Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 0.0e+00 1142.1 591 100.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.5e-235 819.7 594 73.7
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.6e-234 815.1 598 75.1
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 4.4e-184 648.7 598 62.9
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 8.9e-84 315.5 675 35.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 6.4e-82 309.3 634 36.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.4e-81 307.4 597 37.2
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.1e-81 306.6 647 36.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 7.0e-81 305.8 644 37.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-80 303.9 627 36.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.7e-79 301.2 648 35.0
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.9e-79 300.1 624 36.4
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.5e-78 297.4 652 37.6
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.6e-78 296.2 648 37.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 5.6e-78 296.2 659 34.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.6e-77 294.7 621 36.9
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.6e-77 294.7 661 36.3
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.6e-77 293.5 625 35.7
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.7e-77 293.1 623 35.3
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.1e-76 292.0 648 36.7
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-76 290.4 644 36.6
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.1e-76 290.4 628 36.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.2e-76 289.7 655 34.0
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.2e-76 289.7 693 34.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.2e-75 288.5 631 34.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.5e-75 288.1 660 34.5
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.6e-75 287.3 633 35.9
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 9.8e-75 285.4 626 36.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-73 282.0 549 37.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.4e-73 281.6 548 36.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.2e-72 278.5 620 35.8
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.1e-72 277.7 666 36.2
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.8e-72 275.8 670 32.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.9e-71 273.5 652 34.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.1e-71 273.1 644 32.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 6.6e-71 272.7 629 34.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.9e-70 271.2 629 33.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 4.3e-70 270.0 621 36.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 5.6e-70 269.6 651 34.6
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.3e-70 269.2 651 34.9
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 7.3e-70 269.2 638 35.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.8e-69 267.3 655 32.5
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 6.2e-69 266.2 725 32.1
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.1e-69 265.8 653 33.8
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.1e-68 263.8 620 33.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.2e-67 261.9 672 33.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.4e-67 260.0 690 32.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.7e-66 258.1 661 31.9
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.9e-66 256.5 693 31.6
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.9e-65 254.6 678 31.6
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.7e-64 250.8 627 32.5
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.0e-63 248.8 692 31.2
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.6e-63 246.1 665 32.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.5e-62 244.2 573 33.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.5e-62 244.2 568 33.6
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.3e-62 242.7 615 33.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.6e-62 242.3 529 32.5
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 9.6e-62 242.3 629 33.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.2e-61 241.9 635 32.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.6e-61 241.5 734 30.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.1e-60 238.8 640 33.9
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.8e-60 238.0 605 32.2
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.0e-60 236.9 638 31.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.4e-59 233.8 616 32.6
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 7.6e-59 232.6 609 32.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 6.4e-58 229.6 684 30.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 8.4e-58 229.2 666 30.9
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.2e-57 226.9 614 31.8
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.5e-56 223.8 728 29.3
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 6.0e-56 223.0 678 31.6
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.0e-55 222.2 685 30.1
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 8.7e-55 219.2 503 33.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 8.7e-55 219.2 715 29.8
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.3e-54 216.9 607 30.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 4.3e-54 216.9 607 30.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-53 215.3 723 29.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.1e-53 212.6 650 32.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.8e-52 211.5 611 31.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.8e-52 211.5 611 31.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.8e-52 211.5 707 29.0
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.3e-52 209.9 605 29.9
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.6e-51 207.6 522 34.1
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.4e-51 207.2 703 28.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.4e-51 207.2 603 29.4
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.4e-51 207.2 622 31.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 9.9e-51 205.7 618 29.8
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-50 205.3 774 27.5
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.8e-50 203.8 599 28.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.4e-49 201.8 609 30.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.9e-49 201.4 607 28.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.2e-49 200.7 597 30.8
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 5.4e-49 199.9 599 29.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 7.1e-49 199.5 631 29.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 9.3e-49 199.1 524 32.1
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.1e-48 198.0 606 30.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.3e-47 195.3 503 32.2
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.9e-47 193.7 591 31.6
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 5.1e-47 193.4 600 30.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 5.6e-46 189.9 572 29.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.4e-46 189.5 637 29.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-44 184.9 648 30.4
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.0e-44 183.7 557 29.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.5e-43 181.8 663 28.1
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 6.4e-42 176.4 618 30.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.4e-42 176.4 502 31.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.4e-42 176.0 634 28.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.4e-41 175.3 644 29.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.2e-41 173.7 556 30.0
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.5e-41 173.3 495 30.1
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.6e-40 170.2 784 24.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.8e-39 168.3 525 29.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.0e-39 167.5 375 36.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.0e-39 167.5 694 26.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.1e-37 161.4 812 23.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.1e-37 161.4 610 29.5
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.8e-37 161.0 815 23.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.1e-36 159.1 833 25.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.1e-36 157.5 725 25.7
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.5e-35 155.2 687 26.6
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.5e-30 138.7 255 37.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.3e-30 137.1 178 46.1
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 5.7e-30 136.7 249 37.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-29 135.2 746 26.1
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.4e-28 132.1 651 26.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.9e-27 126.7 185 44.3
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.9e-26 124.4 191 36.1
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-24 119.0 154 42.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.5e-22 111.3 208 39.9
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.7e-22 110.2 696 23.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 4.8e-21 107.1 283 33.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-20 105.9 298 32.6
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.4e-20 104.8 286 32.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.9e-20 103.2 137 44.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-19 102.4 512 26.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-19 102.1 389 31.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.0e-19 101.7 307 30.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 5.9e-19 100.1 177 39.0
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.2e-18 98.2 308 30.2
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.5e-18 96.7 309 32.0
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.4e-17 92.8 482 27.0
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.2e-16 92.4 82 50.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.7e-16 91.3 298 29.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.8e-15 86.3 622 24.4
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 3.3e-14 84.3 99 42.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 4.4e-14 84.0 344 29.1
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.7e-13 80.9 520 22.5
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.8e-13 80.5 341 27.9
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.8e-13 80.5 205 33.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-12 77.8 63 63.5
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.3e-12 77.0 119 42.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.1e-12 76.3 204 32.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.2e-10 71.6 88 39.8
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.9e-10 71.2 82 41.5
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.8e-10 70.9 139 31.7
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 3.2e-09 67.8 88 39.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 5.5e-09 67.0 300 30.3
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 4.7e-08 63.9 313 26.2
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.0e-07 62.8 319 27.0
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.8e-07 62.0 176 25.6
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.7e-07 60.1 155 29.7
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 6.7e-07 60.1 57 49.1


User provided reference genes

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