Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 6.3e-106 387.5 201 100.0
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 5.1e-23 112.1 86 74.4
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 4.3e-22 109.0 84 75.0
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 4.7e-21 105.5 88 67.0
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 9.0e-20 101.3 84 69.0
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.5e-19 100.5 84 67.9
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 1.5e-19 100.5 84 69.0
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 4.4e-19 99.0 87 63.2
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 4.4e-19 99.0 84 66.7
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 9.9e-19 97.8 84 65.5
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 2.2e-18 96.7 80 67.5
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 2.2e-18 96.7 85 68.2
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 2.2e-18 96.7 85 68.2
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.2e-18 96.7 84 65.5
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 6.4e-18 95.1 82 63.4
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 6.4e-18 95.1 82 63.4
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 6.4e-18 95.1 84 64.3
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 8.4e-18 94.7 82 62.2
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 1.1e-17 94.4 85 65.9
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 1.1e-17 94.4 84 64.3
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 1.9e-17 93.6 84 60.7
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 3.2e-17 92.8 84 61.9
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 3.2e-17 92.8 84 63.1
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 3.2e-17 92.8 84 61.9
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 5.4e-17 92.0 85 64.7
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 7.1e-17 91.7 85 63.5
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 9.3e-17 91.3 98 51.0
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 9.3e-17 91.3 85 62.4
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 1.2e-16 90.9 78 65.4
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.2e-16 90.9 85 63.5
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.2e-16 90.9 84 61.9
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.6e-16 90.5 85 62.4
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 2.1e-16 90.1 82 61.0
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 2.1e-16 90.1 84 61.9
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 2.7e-16 89.7 84 61.9
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-16 89.4 88 54.5
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 3.5e-16 89.4 84 59.5
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 3.5e-16 89.4 84 59.5
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 3.5e-16 89.4 85 61.2
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 4.6e-16 89.0 84 58.3
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 7.8e-16 88.2 84 59.5
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 7.8e-16 88.2 84 58.3
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 7.8e-16 88.2 85 62.4
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 7.8e-16 88.2 84 63.1
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 1.0e-15 87.8 84 58.3
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.0e-15 87.8 84 60.7
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 1.3e-15 87.4 88 53.4
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.3e-15 87.4 82 59.8
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.3e-15 87.4 84 58.3
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 1.7e-15 87.0 82 59.8
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 1.7e-15 87.0 84 58.3
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 2.3e-15 86.7 84 60.7
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.0e-15 86.3 86 54.7
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 3.9e-15 85.9 84 56.0
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 5.1e-15 85.5 84 56.0
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 5.1e-15 85.5 84 56.0
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 8.7e-15 84.7 84 54.8
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 1.1e-14 84.3 84 56.0
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 1.5e-14 84.0 82 59.8
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 1.9e-14 83.6 75 61.3
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 1.9e-14 83.6 75 61.3
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-14 83.6 85 58.8
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.3e-14 82.8 84 53.6
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 3.3e-14 82.8 83 59.0
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 4.3e-14 82.4 84 54.8
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 4.3e-14 82.4 83 57.8
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 4.3e-14 82.4 84 54.8
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 5.6e-14 82.0 84 58.3
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 5.6e-14 82.0 85 57.6
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 7.3e-14 81.6 84 53.6
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 7.3e-14 81.6 84 53.6
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 7.3e-14 81.6 85 52.9
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 9.6e-14 81.3 84 52.4
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 1.3e-13 80.9 84 53.6
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 1.3e-13 80.9 78 56.4
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 1.3e-13 80.9 81 53.1
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 1.6e-13 80.5 84 52.4
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 2.1e-13 80.1 85 56.5
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 1.1e-12 77.8 86 48.8
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 2.0e-11 73.6 78 48.7
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 9.9e-11 71.2 86 46.5
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 9.9e-11 71.2 41 75.6
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 2.2e-10 70.1 35 88.6
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 2.2e-10 70.1 36 86.1
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 3.2e-09 66.2 82 43.9
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.7e-08 63.2 34 82.4
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 3.5e-08 62.8 104 39.4
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 6.0e-08 62.0 35 77.1
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 3.0e-07 59.7 42 71.4
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 3.9e-07 59.3 37 73.0
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 4.3e-06 55.8 50 60.0
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 9.6e-06 54.7 82 46.3


User provided reference genes

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