Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 2.4e-69 265.4 135 100.0
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 5.1e-35 151.4 89 86.5
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.5e-31 139.8 89 80.9
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 4.2e-29 131.7 92 77.2
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 4.2e-29 131.7 91 75.8
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 5.4e-29 131.3 90 76.7
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 4.6e-28 128.3 151 50.3
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 1.7e-27 126.3 92 71.7
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 2.3e-27 125.9 90 71.1
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.3e-27 125.9 90 71.1
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.3e-27 125.9 90 71.1
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.3e-27 125.9 90 71.1
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 5.1e-27 124.8 92 69.6
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 8.7e-27 124.0 98 70.4
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.9e-26 122.9 90 70.0
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 5.6e-26 121.3 90 70.0
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 2.1e-25 119.4 87 72.4
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 2.1e-25 119.4 90 70.0
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 3.6e-25 118.6 90 70.0
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 3.6e-25 118.6 90 70.0
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 3.6e-25 118.6 90 70.0
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.8e-24 116.3 92 68.5
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 2.4e-24 115.9 92 69.6
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 2.4e-24 115.9 90 68.9
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 2.4e-24 115.9 90 68.9
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 2.4e-24 115.9 92 69.6
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 2.4e-24 115.9 94 71.3
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 3.1e-24 115.5 90 72.2
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 4.0e-24 115.2 96 66.7
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 4.0e-24 115.2 90 66.7
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 5.3e-24 114.8 92 67.4
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 5.3e-24 114.8 95 68.4
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 6.9e-24 114.4 92 69.6
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 9.0e-24 114.0 91 70.3
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 9.0e-24 114.0 91 70.3
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 9.0e-24 114.0 91 70.3
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 9.0e-24 114.0 90 68.9
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 1.2e-23 113.6 94 67.0
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 1.5e-23 113.2 90 62.2
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 2.0e-23 112.8 93 72.0
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.6e-23 112.5 90 68.9
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 4.5e-23 111.7 97 68.0
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 5.8e-23 111.3 95 72.6
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 1.3e-22 110.2 92 65.2
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.3e-22 110.2 94 66.0
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 1.7e-22 109.8 91 65.9
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 3.8e-22 108.6 141 49.6
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 3.8e-22 108.6 96 64.6
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 3.8e-22 108.6 88 70.5
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 6.4e-22 107.8 91 65.9
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 8.4e-22 107.5 91 64.8
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 1.4e-21 106.7 93 66.7
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 1.4e-21 106.7 101 60.4
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 1.9e-21 106.3 92 60.9
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 5.4e-21 104.8 92 64.1
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 7.1e-21 104.4 93 63.4
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 7.1e-21 104.4 91 69.2
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 9.3e-21 104.0 102 61.8
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 1.2e-20 103.6 94 62.8
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.6e-20 103.2 90 61.1
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 1.6e-20 103.2 96 63.5
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.6e-20 103.2 93 61.3
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 2.1e-20 102.8 90 60.0
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 2.7e-20 102.4 91 61.5
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 6.0e-20 101.3 99 65.7
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 6.0e-20 101.3 92 63.0
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 7.9e-20 100.9 91 67.0
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 1.0e-19 100.5 91 67.0
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 3.0e-19 99.0 100 62.0
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 3.0e-19 99.0 94 63.8
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 8.7e-19 97.4 96 60.4
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 1.6e-17 93.2 76 63.2
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 3.6e-17 92.0 90 57.8
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 4.8e-17 91.7 87 70.1
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 6.2e-17 91.3 91 61.5
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.1e-16 90.5 94 56.4
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.8e-16 89.7 91 59.3
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.8e-16 89.7 88 61.4
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 2.6e-15 85.9 96 55.2
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.1e-13 80.5 102 52.9
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 7.1e-13 77.8 91 54.9
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.6e-12 76.6 90 53.3
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 2.7e-12 75.9 67 64.2
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 2.7e-12 75.9 93 49.5
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 2.3e-11 72.8 42 81.0
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.9e-11 72.0 89 50.6
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 5.1e-11 71.6 101 48.5
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 6.7e-11 71.2 102 48.0
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 1.1e-10 70.5 145 39.3
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 1.3e-09 67.0 92 46.7
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 3.7e-09 65.5 102 42.2
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 6.2e-09 64.7 100 46.0
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 1.1e-08 63.9 100 46.0
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 1.0e-06 57.4 56 55.4
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.7e-06 56.6 94 43.6
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 2.2e-06 56.2 50 62.0
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 3.8e-06 55.5 106 41.5
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 4.9e-06 55.1 94 42.6


User provided reference genes

Program Settings