Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 6.6e-188 660.6 349 100.0
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 2.1e-125 453.0 372 70.7
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 2.3e-124 449.5 369 69.9
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 8.1e-85 318.2 332 58.1
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 2.4e-76 290.0 252 63.9
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 9.7e-46 188.3 365 38.4
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 2.3e-39 167.2 219 43.4
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 8.2e-37 158.7 351 37.0
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 9.1e-36 155.2 340 35.6
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 5.0e-34 149.4 254 35.8
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 8.5e-34 148.7 352 32.7
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 9.4e-33 145.2 240 38.8
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 9.4e-33 145.2 240 38.8
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 1.2e-32 144.8 349 32.7
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 6.1e-32 142.5 154 48.7
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 6.1e-32 142.5 338 32.8
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 1.4e-31 141.4 348 34.5
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 3.9e-31 139.8 349 33.8
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.9e-31 139.8 279 35.5
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 5.2e-31 139.4 352 34.1
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.5e-30 137.9 377 31.8
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 2.0e-30 137.5 187 42.8
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 4.4e-30 136.3 261 35.6
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 7.4e-30 135.6 214 37.9
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 3.7e-29 133.3 219 42.0
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.8e-29 132.9 355 32.4
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 4.8e-29 132.9 355 33.5
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 8.2e-29 132.1 341 33.7
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 8.2e-29 132.1 356 30.1
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.1e-28 131.7 245 35.1
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.4e-28 131.3 209 36.8
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 1.4e-28 131.3 291 34.7
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 3.1e-28 130.2 338 31.7
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 5.3e-28 129.4 343 33.2
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 5.3e-28 129.4 247 34.0
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 7.0e-28 129.0 301 34.9
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 9.1e-28 128.6 173 41.6
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 1.6e-27 127.9 173 41.0
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 2.6e-27 127.1 173 41.0
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 3.5e-27 126.7 353 32.9
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 3.5e-27 126.7 226 35.4
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 1.3e-26 124.8 343 29.7
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 2.2e-26 124.0 352 30.4
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 3.8e-26 123.2 270 33.0
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 1.1e-25 121.7 215 36.7
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 1.9e-25 120.9 334 30.5
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 3.2e-25 120.2 363 30.0
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 7.2e-25 119.0 212 34.4
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 3.6e-24 116.7 341 29.0
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 6.1e-24 115.9 323 27.6
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 4.0e-23 113.2 328 30.5
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 4.0e-23 113.2 219 34.2
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 1.2e-22 111.7 336 30.4
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 2.6e-22 110.5 334 31.1
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 4.4e-22 109.8 258 29.5
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 8.2e-21 105.5 354 28.2
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.4e-20 104.8 269 33.8
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.4e-20 104.0 264 33.7
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.4e-20 104.0 264 33.7
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 5.3e-20 102.8 162 37.7
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 9.1e-20 102.1 159 37.1
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 3.5e-19 100.1 335 29.9
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 3.5e-19 100.1 260 32.7
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 2.9e-18 97.1 218 34.9
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 5.5e-17 92.8 220 32.3
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 7.2e-17 92.4 251 29.1
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 9.4e-17 92.0 263 28.9
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.1e-16 90.9 333 27.0
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 4.7e-16 89.7 111 39.6
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 4.7e-16 89.7 193 32.1
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 8.0e-16 89.0 116 41.4
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.0e-15 88.6 254 31.9
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.0e-15 88.6 171 33.9
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 2.3e-15 87.4 202 33.7
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 6.8e-15 85.9 184 31.5
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 1.5e-14 84.7 217 30.9
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 2.0e-14 84.3 165 32.7
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 2.6e-14 84.0 234 30.8
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 3.4e-14 83.6 165 32.7
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 5.7e-14 82.8 165 32.7
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 5.7e-14 82.8 165 32.7
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 9.8e-14 82.0 165 32.1
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 3.7e-13 80.1 294 26.5
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 4.8e-13 79.7 226 28.3
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 1.2e-11 75.1 341 28.2
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 5.9e-11 72.8 177 32.8
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 9.5e-09 65.5 129 31.0
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 2.8e-08 63.9 286 27.6
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 3.6e-08 63.5 319 27.0


User provided reference genes

Program Settings