Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 6.0e-180 634.0 316 100.0
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 3.0e-155 552.0 316 86.4
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 3.5e-151 538.5 316 85.8
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 4.7e-140 501.5 316 80.7
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.1e-128 463.8 322 76.1
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 2.4e-104 382.9 322 59.0
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.3e-102 376.3 322 59.0
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 5.1e-102 375.2 322 58.7
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.1e-101 374.0 317 58.7
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.1e-101 374.0 322 58.1
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.9e-101 373.2 318 57.9
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 4.3e-101 372.1 317 57.7
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 2.8e-100 369.4 320 58.4
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 2.8e-100 369.4 317 56.8
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 4.7e-100 368.6 322 56.2
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 2.3e-99 366.3 318 58.8
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 5.2e-99 365.2 322 59.3
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 6.8e-99 364.8 321 58.6
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 8.9e-99 364.4 317 57.4
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 1.5e-98 363.6 318 56.6
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 2.0e-98 363.2 318 58.8
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 9.9e-98 360.9 321 57.0
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 6.4e-97 358.2 319 56.1
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.1e-96 357.5 322 55.9
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 2.4e-96 356.3 320 55.3
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 5.4e-96 355.1 320 55.0
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 7.1e-96 354.8 318 58.8
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 9.2e-96 354.4 322 57.5
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 6.0e-95 351.7 321 54.5
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 1.7e-94 350.1 317 56.2
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 2.3e-94 349.7 320 55.9
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 3.0e-94 349.4 364 51.1
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 5.6e-93 345.1 318 56.9
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 1.6e-92 343.6 322 55.6
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 2.8e-92 342.8 322 54.3
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 2.8e-92 342.8 317 56.8
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 3.6e-92 342.4 322 54.3
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 6.2e-92 341.7 317 54.6
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 4.0e-91 339.0 317 53.3
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 4.4e-90 335.5 318 52.8
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 4.4e-90 335.5 323 53.9
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.1e-88 330.9 317 53.3
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 1.1e-88 330.9 316 54.1
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.4e-88 330.5 322 52.2
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 4.2e-88 328.9 318 53.8
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.6e-87 327.0 317 53.6
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 1.7e-86 323.6 322 50.0
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 3.0e-86 322.8 324 53.7
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 5.1e-86 322.0 321 52.0
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 8.7e-86 321.2 321 54.2
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 8.7e-86 321.2 321 53.0
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.9e-85 320.1 318 52.8
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 7.3e-85 318.2 321 51.1
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.6e-84 317.0 321 50.2
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 2.1e-84 316.6 321 50.8
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 2.8e-84 316.2 317 51.7
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 2.8e-84 316.2 319 52.0
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 3.6e-84 315.8 321 53.0
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.1e-83 314.3 321 51.1
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.4e-83 313.9 326 49.7
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 7.6e-82 308.1 393 46.1
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 1.7e-81 307.0 317 51.7
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 4.9e-81 305.4 317 51.1
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 9.3e-80 301.2 319 50.2
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 2.1e-79 300.1 317 51.4
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 2.7e-79 299.7 317 50.2
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 2.7e-79 299.7 317 49.5
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.0e-78 297.7 317 50.2
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.7e-78 297.0 319 50.2
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 3.9e-78 295.8 320 48.8
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 6.6e-78 295.0 317 50.8
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-77 294.3 319 49.8
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 1.1e-77 294.3 319 48.0
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.5e-77 293.1 325 51.4
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 4.3e-77 292.4 317 49.8
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 7.3e-77 291.6 320 50.3
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 9.6e-77 291.2 319 49.5
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 9.6e-77 291.2 437 41.2
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.6e-76 290.4 317 50.2
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 1.6e-76 290.4 332 47.9
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 3.6e-76 289.3 319 49.5
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 3.6e-76 289.3 321 46.7
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 5.3e-75 285.4 321 49.5
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 5.3e-75 285.4 241 59.8
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.3e-75 285.4 319 49.8
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 4.5e-74 282.3 319 48.3
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 1.3e-73 280.8 333 47.4
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.3e-73 280.8 322 46.9
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 4.9e-73 278.9 318 50.3
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 3.9e-70 269.2 317 48.3
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 8.7e-70 268.1 229 59.8
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 4.3e-69 265.8 341 45.2
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 8.1e-68 261.5 296 49.3
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 4.0e-67 259.2 328 45.7
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 9.0e-67 258.1 238 54.2
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.5e-66 257.3 327 45.0
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 5.8e-66 255.4 257 54.5
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.7e-65 253.8 276 50.4
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 8.4e-65 251.5 262 50.8
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 4.6e-63 245.7 290 49.3
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 5.1e-62 242.3 322 45.3
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 6.2e-60 235.3 270 49.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 5.3e-59 232.3 271 45.8
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 6.9e-59 231.9 301 44.9
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 2.6e-58 229.9 281 48.4
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 1.9e-56 223.8 278 47.8
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 4.2e-56 222.6 335 41.2
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 1.6e-55 220.7 340 40.6
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 3.5e-55 219.5 255 47.1
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 7.9e-55 218.4 333 38.7
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 6.7e-54 215.3 391 36.3
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.1e-53 214.5 169 60.9
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 1.4e-51 207.6 309 41.1
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 7.7e-50 201.8 323 36.5
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 1.3e-49 201.1 199 49.7
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.0e-46 191.4 317 36.9
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 2.3e-46 190.3 331 37.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 6.7e-46 188.7 229 45.9
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 4.8e-44 182.6 340 37.1
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.8e-43 180.6 262 40.1
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 6.5e-41 172.2 316 38.9
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 8.5e-33 145.2 240 39.2
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 1.6e-15 87.8 55 72.7
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.0e-14 83.6 47 76.6
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.0e-14 83.6 47 76.6
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 4.9e-12 76.3 49 73.5
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 1.3e-09 68.2 49 65.3


User provided reference genes

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