Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.0e-131 473.4 243 100.0
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 6.2e-124 447.6 243 94.7
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.3e-121 439.9 243 93.4
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 2.3e-110 402.5 244 87.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 7.8e-95 350.9 239 73.6
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 3.9e-94 348.6 239 73.2
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 8.7e-94 347.4 239 74.1
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 8.7e-94 347.4 241 73.0
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.8e-91 339.7 237 71.7
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.8e-89 332.0 238 70.6
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.9e-89 331.6 235 71.5
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.1e-88 330.5 241 72.2
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 2.1e-87 326.2 238 70.2
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.9e-86 322.0 225 72.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.1e-85 320.5 240 67.5
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.9e-85 319.7 243 68.7
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 3.3e-85 318.9 225 74.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 5.6e-85 318.2 220 72.3
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.1e-84 316.2 245 70.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.8e-84 315.1 239 68.2
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 8.1e-84 314.3 240 68.3
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.0e-83 312.0 243 67.5
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 9.0e-83 310.8 240 70.0
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.3e-81 307.0 242 66.5
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 2.9e-81 305.8 234 66.7
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 3.8e-81 305.4 237 70.0
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 3.8e-81 305.4 239 69.9
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 3.8e-81 305.4 243 69.5
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 6.4e-81 304.7 235 66.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 6.4e-81 304.7 235 66.8
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-80 303.5 235 66.8
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.9e-80 303.1 247 69.6
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.9e-80 303.1 215 73.5
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 4.2e-80 302.0 214 73.4
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 7.1e-80 301.2 240 62.9
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 7.1e-80 301.2 244 65.2
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 9.3e-80 300.8 242 65.7
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 9.3e-80 300.8 236 65.7
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.2e-79 300.4 247 64.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 3.5e-79 298.9 214 72.9
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 6.0e-79 298.1 220 67.7
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.9e-78 295.4 246 63.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 3.9e-78 295.4 219 65.3
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.9e-77 293.1 241 65.6
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.5e-77 292.7 217 66.4
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 9.6e-77 290.8 240 63.3
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-76 290.4 235 66.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.3e-76 290.4 241 63.5
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.6e-76 290.0 213 70.0
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.6e-76 290.0 242 64.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 3.7e-76 288.9 234 64.5
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 4.8e-76 288.5 223 66.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.8e-76 288.5 239 66.1
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.1e-75 287.3 243 61.7
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.1e-75 287.3 227 66.1
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.4e-75 287.0 244 64.8
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 6.9e-75 284.6 243 64.6
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 9.0e-75 284.3 215 65.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.2e-74 283.9 333 50.2
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 3.4e-74 282.3 220 67.3
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.0e-73 280.8 222 64.4
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.7e-73 280.0 222 67.1
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.7e-73 280.0 236 64.4
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.9e-73 279.3 238 62.6
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.9e-73 278.5 235 67.2
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.4e-72 276.9 241 58.9
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.5e-72 276.2 235 60.4
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.2e-72 275.8 216 64.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 5.5e-72 275.0 237 60.3
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 9.3e-72 274.2 214 70.6
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.2e-71 273.9 207 66.2
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.6e-71 273.5 223 65.9
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.6e-71 273.5 195 70.3
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.6e-71 273.5 220 69.5
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.1e-71 273.1 257 59.9
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.1e-71 273.1 214 65.9
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.1e-71 273.1 220 69.5
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 4.6e-71 271.9 241 60.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 5.1e-70 268.5 240 58.3
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 6.7e-70 268.1 242 61.6
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.1e-69 267.3 243 58.8
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-69 267.3 241 58.5
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.1e-69 267.3 225 67.6
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.3e-69 265.4 213 65.3
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 7.4e-69 264.6 230 60.9
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.6e-68 263.5 243 58.4
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.2e-68 263.1 238 59.2
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.8e-68 262.7 299 54.2
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 6.3e-68 261.5 244 59.0
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.8e-67 260.0 223 60.5
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.1e-67 258.8 223 60.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 4.1e-67 258.8 239 56.9
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 6.9e-67 258.1 241 60.2
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.6e-66 256.1 228 60.1
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.4e-66 255.8 239 61.9
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 4.5e-66 255.4 234 57.3
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 7.7e-66 254.6 225 64.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.3e-65 253.8 240 57.5
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.7e-65 253.4 223 59.2
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 1.1e-64 250.8 237 61.2
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 5.5e-64 248.4 239 59.0
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.2e-63 247.3 235 57.0
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.6e-63 246.9 239 59.0
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.6e-63 245.7 239 55.6
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 7.9e-63 244.6 228 59.2
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.8e-62 243.4 234 59.4
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 2.3e-62 243.0 241 55.2
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 8.8e-62 241.1 198 68.2
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.5e-61 240.4 242 53.3
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 7.4e-61 238.0 178 72.5
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.7e-60 236.9 198 62.1
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 9.1e-59 231.1 204 60.3
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.0e-58 229.9 227 59.0
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 8.5e-57 224.6 248 54.8
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.4e-56 223.8 221 56.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.1e-53 214.2 181 67.4
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.5e-53 213.8 239 51.5
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 2.0e-53 213.4 170 64.1
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 9.1e-51 204.5 178 61.8
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.0e-50 203.4 130 76.2
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 2.0e-50 203.4 232 49.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 5.9e-50 201.8 167 65.3
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.9e-49 199.5 213 49.8
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 6.5e-49 198.4 149 66.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 2.3e-46 189.9 133 72.9
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.9e-46 189.1 189 54.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 8.8e-46 188.0 177 59.3
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.5e-45 187.2 189 54.0
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.5e-45 187.2 189 54.0
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.6e-45 186.4 368 37.2
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 6.3e-44 181.8 209 50.7
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.3e-44 181.8 193 53.4
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.1e-43 179.5 191 55.5
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.2e-41 173.3 202 55.0
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 4.4e-37 159.1 206 45.1
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 7.2e-32 141.7 194 47.9
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.7e-21 105.5 124 50.8
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.8e-20 103.2 272 34.2
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.9e-16 90.5 246 30.1
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.7e-15 85.9 96 51.0
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.3e-14 83.6 74 52.7
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.3e-14 83.6 59 64.4
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.0e-13 80.5 94 51.1
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 4.4e-13 79.3 188 31.4
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 5.8e-13 79.0 63 58.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.3e-12 77.8 180 35.0
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.7e-12 77.4 57 66.7
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 6.4e-12 75.5 93 51.6
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.1e-11 74.7 105 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.9e-11 73.9 251 27.9
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.4e-11 72.4 44 79.5
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.7e-09 67.4 166 31.3
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 4.3e-08 62.8 45 66.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.6e-07 60.8 106 39.6
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 1.8e-06 57.4 64 48.4
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 5.2e-06 55.8 65 41.5
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 6.8e-06 55.5 64 43.8
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 6.8e-06 55.5 64 45.3
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 8.9e-06 55.1 64 45.3


User provided reference genes

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