Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.0e-246 856.3 437 100.0
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 7.5e-205 717.2 390 91.8
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 7.5e-205 717.2 390 94.1
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 4.1e-195 684.9 391 87.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 7.6e-165 584.3 393 74.8
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.8e-164 582.0 407 73.7
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 6.4e-164 581.3 392 75.3
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 7.1e-163 577.8 392 74.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.6e-162 576.6 391 73.9
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.1e-162 576.2 393 74.3
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 2.7e-162 575.9 390 74.6
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 3.5e-162 575.5 391 74.4
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 7.8e-162 574.3 392 72.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.3e-161 573.5 393 74.0
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 3.0e-161 572.4 391 76.7
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.6e-161 571.2 391 73.7
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.9e-160 569.7 391 73.4
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 1.3e-159 567.0 393 72.8
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-159 565.8 391 72.4
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.8e-159 565.8 391 72.4
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 2.8e-159 565.8 390 73.1
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 6.2e-159 564.7 395 73.7
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.1e-158 563.9 391 73.1
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-158 562.4 391 72.4
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 4.0e-158 562.0 396 72.2
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 4.0e-158 562.0 391 72.6
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.2e-157 560.5 391 73.7
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.4e-157 558.9 408 71.6
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.4e-156 554.7 395 72.7
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.1e-155 551.2 394 72.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 7.1e-155 551.2 392 71.4
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.8e-153 546.6 392 70.9
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.0e-153 545.8 394 72.3
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 3.9e-153 545.4 391 71.4
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.5e-152 542.7 391 71.6
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 3.3e-152 542.3 392 71.2
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.6e-152 541.6 408 70.3
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 9.6e-152 540.8 393 69.0
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.3e-151 540.4 418 68.7
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.7e-151 538.9 392 70.9
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 8.1e-151 537.7 418 66.5
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 8.1e-151 537.7 407 69.5
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-150 537.0 392 71.2
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.4e-150 537.0 391 69.3
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 5.3e-150 535.0 392 70.2
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-149 533.1 391 68.8
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 5.8e-149 531.6 393 70.5
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.7e-148 530.0 394 68.8
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.8e-148 528.9 393 68.4
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.9e-147 526.6 419 66.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 1.2e-146 523.9 397 67.3
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 6.0e-146 521.5 394 68.0
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.8e-145 520.0 393 67.7
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 4.3e-144 515.4 394 66.2
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 4.3e-144 515.4 393 68.2
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 7.4e-144 514.6 390 66.4
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.6e-143 513.5 393 67.4
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 2.8e-143 512.7 390 65.6
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 3.7e-143 512.3 397 66.8
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.1e-142 510.8 390 66.4
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.8e-142 510.0 393 68.4
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.8e-142 510.0 393 65.6
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 6.9e-142 508.1 391 65.5
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 9.0e-142 507.7 390 65.6
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 9.0e-142 507.7 391 68.8
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.5e-141 506.9 391 68.5
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 2.0e-141 506.5 391 68.5
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 7.6e-141 504.6 390 65.1
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 7.6e-141 504.6 390 65.1
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 7.6e-141 504.6 433 62.6
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.3e-140 503.8 391 68.0
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.7e-140 503.4 398 64.6
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 2.9e-140 502.7 391 66.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 4.9e-140 501.9 398 64.3
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.1e-139 500.7 393 66.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 3.2e-139 499.2 394 67.3
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 8.7e-137 491.1 392 64.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 8.7e-137 491.1 395 65.3
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 4.3e-136 488.8 390 65.9
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 5.7e-136 488.4 395 64.1
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.7e-136 487.6 352 71.0
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.3e-135 485.0 390 64.1
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-134 484.2 395 66.6
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.4e-134 483.8 395 64.6
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.4e-134 483.0 395 65.6
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 5.3e-134 481.9 391 64.7
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.2e-133 480.7 399 62.7
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.9e-131 473.4 390 61.8
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 1.4e-129 467.2 379 63.9
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.8e-129 466.8 388 62.4
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.5e-125 453.8 392 61.7
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.8e-124 449.1 406 58.9
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.3e-119 434.1 396 58.6
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.7e-119 433.7 426 57.3
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.1e-115 421.0 303 72.6
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.2e-115 419.1 402 57.7
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.2e-115 419.1 388 56.4
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 7.2e-115 418.3 385 58.2
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.2e-114 417.5 390 57.4
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.1e-114 416.8 385 58.2
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.8e-113 413.7 269 75.5
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 5.7e-112 408.7 410 57.3
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.3e-111 407.5 402 57.5
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 2.8e-111 406.4 382 57.9
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 4.5e-109 399.1 390 54.6
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 6.5e-108 395.2 389 54.8
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 4.5e-101 372.5 432 52.1
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.3e-100 370.9 304 63.5
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.8e-97 358.2 307 60.6
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 7.7e-93 345.1 396 48.2
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 6.6e-92 342.0 421 49.6
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 9.5e-91 338.2 389 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.6e-85 320.9 397 44.6
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.4e-78 295.8 274 57.7
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.6e-77 294.3 385 44.9
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 2.7e-77 293.5 410 42.0
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 3.5e-69 266.5 236 56.8
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.4e-62 243.8 256 51.2
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 5.4e-62 242.7 155 74.8
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 9.2e-62 241.9 349 45.8
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.9e-59 234.2 363 44.1
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.8e-42 177.2 156 66.0
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-37 161.0 111 70.3
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.0e-37 159.5 111 69.4
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.0e-36 158.7 111 70.3
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.4e-35 152.5 111 67.6
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 4.9e-31 139.8 125 57.6
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 6.0e-29 132.9 99 61.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 7.4e-27 125.9 109 71.6
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.4e-22 111.7 105 62.9
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.5e-22 110.9 222 37.8
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 2.3e-20 104.4 116 55.2
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 6.7e-20 102.8 76 67.1
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.9e-15 87.4 60 66.7
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 7.2e-14 82.8 104 44.2
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.0e-12 79.0 92 44.6
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 3.0e-12 77.4 337 24.9
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.0e-12 77.4 59 67.8
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.8e-10 70.9 80 56.2
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.9e-07 60.8 45 62.2


User provided reference genes

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