Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 1.3e-279 965.7 466 100.0
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 4.9e-263 910.6 466 93.8
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.9e-259 898.7 466 93.1
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 2.0e-240 835.5 465 85.2
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.0e-191 673.7 459 69.5
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 5.0e-191 671.4 463 71.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 6.8e-188 661.0 468 69.4
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 7.5e-187 657.5 473 70.0
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 7.0e-185 651.0 468 66.0
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.8e-181 639.0 454 66.3
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.0e-181 637.5 454 66.1
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 1.4e-180 636.7 458 66.4
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 1.8e-180 636.3 454 65.9
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.3e-180 636.0 470 65.1
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 3.4e-179 632.1 468 67.1
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 4.4e-179 631.7 470 64.9
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.6e-176 623.2 454 66.7
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.7e-170 602.1 473 62.2
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 7.1e-169 597.8 469 61.2
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.2e-169 597.4 476 62.6
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 9.2e-169 597.4 471 62.4
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 3.0e-167 592.4 477 60.0
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.1e-166 590.5 466 60.7
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.5e-166 590.1 457 61.3
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 9.6e-166 587.4 467 62.5
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 2.1e-165 586.3 482 60.4
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.1e-164 583.9 460 61.5
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 2.6e-163 579.3 453 60.5
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 2.2e-162 576.2 456 59.9
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 6.0e-160 568.2 465 59.8
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 6.0e-160 568.2 469 60.1
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 7.8e-160 567.8 474 58.9
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 3.9e-159 565.5 460 60.4
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 4.3e-158 562.0 462 59.5
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 1.3e-157 560.5 462 59.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 6.2e-157 558.1 470 60.0
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 2.4e-156 556.2 481 59.7
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 7.6e-155 551.2 459 56.2
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.3e-154 550.4 454 59.3
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.1e-153 547.4 459 55.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 1.1e-153 547.4 454 58.8
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 2.4e-153 546.2 468 56.6
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 3.2e-153 545.8 486 57.0
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.4e-153 545.0 469 57.4
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 9.3e-153 544.3 457 59.5
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 2.1e-152 543.1 457 59.1
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 2.1e-152 543.1 458 59.6
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.7e-152 542.7 473 58.1
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 6.0e-152 541.6 469 59.7
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 7.9e-152 541.2 466 58.8
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.3e-151 540.4 454 57.9
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.3e-151 540.4 483 57.6
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 1.7e-151 540.0 467 57.0
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 5.1e-151 538.5 450 58.0
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 6.6e-151 538.1 454 57.9
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.9e-150 536.6 457 58.4
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 5.6e-150 535.0 453 58.7
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 9.6e-150 534.3 454 56.4
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 4.0e-148 528.9 450 58.4
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 4.0e-148 528.9 468 55.3
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 3.4e-147 525.8 474 56.5
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 4.9e-146 521.9 466 57.1
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 4.6e-144 515.4 472 55.3
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.1e-142 510.8 473 54.1
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.9e-142 510.0 459 55.6
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 4.3e-142 508.8 429 60.1
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 7.4e-142 508.1 457 56.2
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 1.2e-139 500.7 467 53.1
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 3.4e-139 499.2 477 54.7
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 3.4e-139 499.2 461 54.2
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 1.9e-134 483.4 475 51.8
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 6.2e-133 478.4 466 53.9
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 3.1e-132 476.1 452 52.7
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.9e-132 474.9 444 54.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 2.5e-129 466.5 451 51.4
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 2.8e-125 453.0 481 49.1
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.4e-124 450.7 451 49.0
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 5.5e-121 438.7 322 69.9
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 1.6e-120 437.2 451 50.3
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 2.7e-120 436.4 457 50.8
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 6.1e-120 435.3 495 50.7
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 2.0e-118 430.3 450 49.3
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 7.4e-118 428.3 454 49.6
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 7.4e-118 428.3 416 52.6
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 1.3e-117 427.6 320 65.3
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 1.5e-115 420.6 453 49.7
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 2.0e-115 420.2 454 46.0
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 1.0e-114 417.9 449 47.9
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 2.3e-111 406.8 454 46.9
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 2.3e-111 406.8 454 46.9
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 5.1e-111 405.6 453 48.3
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 1.6e-107 394.0 455 44.4
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 2.0e-107 393.7 453 46.1
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 4.5e-107 392.5 454 46.0
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 6.5e-106 388.7 454 45.8
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 1.5e-105 387.5 450 46.2
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 7.5e-102 375.2 467 42.6
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.0e-95 354.8 453 43.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.0e-95 352.8 365 47.9
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.2e-84 315.1 289 54.3
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 2.9e-82 310.1 278 57.2
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 3.4e-78 296.6 323 50.5
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 1.4e-76 291.2 497 35.4
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.0e-75 287.3 246 58.1
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.5e-65 254.6 327 43.1
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 3.7e-61 240.0 455 34.9
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 9.2e-60 235.3 525 31.2
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 8.9e-55 218.8 242 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 1.3e-45 188.3 360 33.1
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.3e-40 171.8 150 54.0
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 2.0e-38 164.5 560 25.9
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 9.3e-36 155.6 192 43.8
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.8e-32 143.3 115 56.5
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 5.3e-31 139.8 99 65.7
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 4.2e-28 130.2 132 48.5
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.1e-27 127.9 90 74.4
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 2.1e-27 127.9 119 54.6
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 3.0e-26 124.0 166 38.0
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 5.6e-25 119.8 81 75.3
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 3.7e-24 117.1 93 61.3
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 3.4e-22 110.5 105 46.7
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 4.9e-21 106.7 248 32.3
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.9e-20 104.8 91 53.8
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-18 98.6 65 66.2
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 2.2e-08 64.7 135 35.6
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 1.1e-07 62.4 153 27.5
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 9.0e-07 59.3 183 27.3
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.9e-06 56.6 141 28.4
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 7.7e-06 56.2 135 28.9


User provided reference genes

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