Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 2.6e-214 748.4 376 100.0
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 5.7e-177 624.4 341 92.1
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 8.8e-170 600.5 341 88.6
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 1.1e-167 593.6 342 87.4
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 4.7e-131 471.9 343 68.8
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 1.4e-130 470.3 343 67.9
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 1.4e-130 470.3 341 68.9
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 5.8e-129 464.9 344 67.4
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 3.2e-127 459.1 343 66.5
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 5.4e-127 458.4 341 67.2
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 2.7e-126 456.1 343 65.9
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 3.5e-126 455.7 343 65.6
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 3.5e-126 455.7 344 67.7
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.3e-125 453.0 341 64.8
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 1.5e-124 450.3 343 64.4
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 3.3e-124 449.1 343 67.3
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 3.3e-124 449.1 345 65.8
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 4.3e-124 448.7 343 65.9
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 4.7e-123 445.3 346 65.0
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 6.8e-122 441.4 346 64.7
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 6.4e-120 434.9 341 63.0
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 6.4e-120 434.9 345 62.6
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 2.4e-119 433.0 345 66.1
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 2.4e-119 433.0 341 62.8
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.2e-119 432.6 343 62.4
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 7.1e-119 431.4 352 62.5
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.0e-117 427.6 345 62.0
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.3e-117 426.4 342 63.7
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.6e-116 421.8 357 60.2
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 1.6e-115 420.2 340 63.8
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 1.6e-115 420.2 338 61.8
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.8e-114 416.8 344 62.5
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 9.9e-113 411.0 345 60.9
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 9.9e-113 411.0 340 62.4
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 2.5e-108 396.4 340 59.7
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 3.3e-108 396.0 347 55.9
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 1.3e-107 394.0 277 67.5
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 3.6e-107 392.5 340 60.9
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 4.8e-107 392.1 340 59.1
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 6.2e-107 391.7 342 58.2
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.4e-106 390.6 339 61.1
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.4e-106 389.8 277 70.4
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 2.9e-104 382.9 340 58.5
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 3.8e-104 382.5 344 57.6
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.1e-103 380.9 338 56.8
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 5.4e-103 378.6 344 58.1
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 1.3e-101 374.0 341 58.7
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 3.9e-101 372.5 340 56.5
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 1.5e-100 370.5 339 57.5
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 1.9e-100 370.2 341 58.4
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.5e-100 369.8 343 55.4
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 7.3e-100 368.2 346 56.1
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.6e-99 367.1 343 58.9
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 4.8e-99 365.5 339 54.9
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 4.8e-99 365.5 339 56.0
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.1e-98 362.8 343 58.3
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 2.6e-97 359.8 340 54.7
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 3.4e-97 359.4 340 54.7
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 3.4e-97 359.4 339 55.8
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 4.5e-97 359.0 340 54.7
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 4.9e-96 355.5 345 55.1
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 8.4e-96 354.8 382 51.3
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 1.9e-95 353.6 353 56.7
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 4.2e-95 352.4 426 46.2
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 4.2e-95 352.4 338 55.3
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 4.2e-95 352.4 337 56.1
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 4.6e-94 349.0 340 55.6
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 7.9e-94 348.2 341 56.0
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 8.7e-93 344.7 356 54.8
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.1e-92 344.4 339 54.3
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.9e-92 343.6 344 55.8
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 2.5e-92 343.2 349 54.2
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 1.6e-91 340.5 349 53.3
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.6e-91 340.5 330 54.8
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 1.4e-90 337.4 329 53.2
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.6e-89 333.2 351 52.1
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 3.4e-89 332.8 344 52.9
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 1.0e-88 331.3 273 59.0
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.7e-88 330.5 340 52.9
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 3.8e-88 329.3 319 55.2
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 8.4e-88 328.2 342 52.9
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 2.5e-84 316.6 350 51.7
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 5.3e-82 308.9 322 52.2
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 2.0e-81 307.0 282 56.0
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 5.0e-80 302.4 346 49.4
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 8.4e-80 301.6 329 50.5
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.2e-78 297.7 341 50.4
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 5.7e-76 288.9 213 69.5
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 7.4e-76 288.5 337 46.6
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 1.4e-66 257.7 210 61.4
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 3.8e-56 223.0 246 51.6
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 3.7e-51 206.5 295 44.1
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 7.0e-50 202.2 281 39.1
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 2.5e-47 193.7 175 54.9
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 4.7e-46 189.5 173 54.9
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.9e-39 167.5 187 51.3
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 1.5e-36 157.9 258 38.4
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 2.3e-32 144.1 198 45.5
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 5.0e-32 142.9 328 32.3
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 1.5e-31 141.4 266 36.8
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 3.0e-29 133.7 169 45.6
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.5e-28 131.3 177 44.6
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.0e-28 131.0 169 39.6
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.6e-28 130.6 91 70.3
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 1.4e-26 124.8 131 52.7
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 6.8e-21 105.9 110 50.9
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 1.5e-20 104.8 147 41.5
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 2.6e-20 104.0 136 50.7
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 5.4e-18 96.3 105 50.5
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.8e-14 84.0 87 42.5
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 1.6e-09 68.2 85 47.1
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 1.3e-08 65.1 66 47.0
EL10Ac1g02376 Beta vulgaris HOM05D006958 ORTHO05D008814 1.2e-06 58.5 68 51.5


User provided reference genes

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