Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 4.6e-211 737.6 373 100.0
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.6e-190 668.7 373 91.2
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.6e-187 659.4 373 90.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.7e-187 658.7 371 89.2
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.1e-164 583.6 374 76.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.0e-162 575.5 366 76.2
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.6e-160 569.7 372 74.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.4e-159 565.8 372 73.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.4e-159 565.8 428 67.3
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 9.1e-159 563.9 372 73.1
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.2e-158 563.5 372 74.2
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.4e-158 562.0 373 72.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.0e-157 560.5 371 74.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 8.5e-157 557.4 375 73.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.9e-156 556.2 369 72.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.2e-156 555.4 373 72.7
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.2e-156 555.1 372 72.3
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.1e-155 552.7 374 71.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.6e-155 552.0 374 74.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-154 550.4 373 71.0
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-154 550.1 373 71.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.0e-153 546.2 372 71.5
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 3.3e-153 545.4 374 71.4
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.3e-152 543.5 372 71.0
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.7e-152 543.1 375 71.5
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-152 542.7 373 70.2
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.2e-152 542.7 372 72.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.8e-152 542.3 375 72.0
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 3.7e-152 542.0 373 69.7
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.8e-152 541.6 372 71.8
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.3e-152 541.2 376 72.3
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.1e-151 540.4 369 71.3
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 4.1e-151 538.5 384 68.5
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.2e-150 537.0 372 70.2
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.5e-150 536.6 373 70.0
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.0e-150 536.2 372 70.4
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.0e-150 536.2 372 70.2
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.4e-150 535.4 379 67.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 4.5e-150 535.0 372 69.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 7.7e-150 534.3 374 71.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.0e-149 533.9 372 70.7
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.2e-149 532.7 372 69.4
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 5.0e-149 531.6 372 70.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 5.0e-149 531.6 379 68.1
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 6.5e-149 531.2 371 69.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.1e-148 530.4 372 69.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.5e-148 529.3 372 70.7
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.2e-148 528.9 371 68.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.2e-148 527.7 372 70.2
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 9.4e-148 527.3 371 68.5
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 9.4e-148 527.3 372 68.8
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.6e-147 526.6 379 68.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.6e-147 526.6 320 77.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.1e-147 526.2 367 68.7
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.8e-146 523.1 364 70.1
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.8e-146 523.1 364 70.1
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 3.9e-146 521.9 371 67.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 6.7e-146 521.2 371 67.7
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 8.8e-146 520.8 371 67.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-145 520.0 371 67.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.0e-145 519.6 371 66.8
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.6e-145 519.2 370 67.3
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 5.7e-145 518.1 371 66.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.2e-144 516.2 373 67.8
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 2.8e-144 515.8 371 68.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 8.2e-144 514.2 406 64.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.1e-143 513.8 368 67.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.4e-143 513.5 371 67.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.8e-143 513.1 373 67.0
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.1e-143 512.3 363 69.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 4.1e-143 511.9 370 67.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.3e-143 511.5 406 63.5
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 9.1e-143 510.8 367 69.8
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.5e-142 508.8 364 68.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.5e-142 508.4 370 67.3
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 7.7e-142 507.7 369 69.1
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.3e-141 506.9 364 68.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.0e-138 497.3 373 66.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.0e-138 497.3 365 66.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.0e-138 495.7 373 65.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 8.8e-138 494.2 371 63.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-137 493.8 393 63.9
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.5e-137 493.4 371 67.7
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 9.7e-137 490.7 406 61.3
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.8e-136 488.4 397 61.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.3e-136 488.0 397 61.5
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-135 487.3 397 61.5
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.4e-135 486.9 372 65.3
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.6e-134 483.4 320 73.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.1e-132 477.2 328 71.0
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.5e-132 474.9 372 64.0
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.3e-130 469.5 306 73.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.0e-130 468.8 373 63.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.0e-130 468.8 373 63.0
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 5.2e-130 468.4 365 64.4
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.5e-129 466.8 372 62.1
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 5.7e-129 464.9 372 62.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.1e-127 458.8 302 74.8
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 7.0e-127 458.0 375 64.3
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 7.0e-127 458.0 374 62.6
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 9.1e-127 457.6 369 61.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.9e-125 452.6 354 64.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.5e-124 449.5 311 71.4
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.5e-121 440.3 372 59.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 2.4e-119 433.0 292 68.8
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.1e-119 432.2 320 66.2
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.5e-116 423.7 308 69.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 3.6e-115 419.1 308 66.9
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-109 399.8 397 54.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 8.9e-106 387.9 372 55.9
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.8e-105 384.4 372 53.5
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.8e-105 384.4 287 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.1e-100 370.9 372 50.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-100 370.9 296 62.8
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.5e-100 367.9 372 53.8
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 4.7e-99 365.5 361 51.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.8e-98 363.6 373 53.6
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.2e-97 360.9 366 54.6
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.7e-96 357.1 311 54.3
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 4.6e-94 349.0 374 51.1
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.3e-93 347.4 342 50.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.1e-93 345.5 279 64.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 9.5e-92 341.3 352 49.4
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-63 247.7 154 75.3
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.9e-56 223.4 325 38.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.7e-53 211.8 137 72.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 6.5e-48 195.7 360 34.7
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-38 162.5 137 59.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-37 161.4 138 62.3
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.5e-36 157.9 342 33.0
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.3e-32 144.8 197 42.1
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-31 141.7 136 55.1
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-30 137.9 94 70.2
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.1e-30 137.5 113 63.7
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-30 135.6 94 68.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 9.7e-28 128.6 126 58.7
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-24 117.1 97 62.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-24 117.1 93 65.6
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 6.1e-22 109.4 110 48.2
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 3.0e-21 107.1 361 25.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 3.3e-20 103.6 110 46.4
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.7e-19 100.1 87 57.5
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.8e-19 99.8 89 59.6
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-18 98.6 88 56.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-18 97.8 116 55.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-18 97.8 88 59.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-18 97.8 88 59.1
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-18 97.8 89 58.4
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.1e-18 96.7 88 59.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.0e-18 95.9 88 58.0
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.1e-18 95.5 88 58.0
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-17 94.4 89 56.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.5e-17 93.6 80 61.2
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.5e-17 93.6 101 53.5
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.7e-17 92.4 89 55.1
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.1e-15 88.6 85 57.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.7e-14 84.0 45 91.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.3e-13 80.9 70 68.6
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.6e-12 77.4 70 62.9
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-11 75.1 86 48.8
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-09 68.6 66 56.1
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 4.2e-07 60.1 43 69.8
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.2e-07 60.1 49 59.2
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 7.2e-07 59.3 44 68.2
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.5e-07 58.9 49 59.2
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 9.5e-07 58.9 49 59.2
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 70.3
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 70.3
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.1e-06 57.8 42 69.0
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.1e-06 57.8 49 57.1
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.8e-06 57.4 37 67.6
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.6e-06 57.0 37 67.6
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.6e-06 57.0 37 70.3
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 6.1e-06 56.2 42 64.3
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.0e-06 55.8 43 62.8
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 8.0e-06 55.8 37 67.6


User provided reference genes

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