Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 5.5e-118 427.6 204 100.0
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 2.3e-103 379.0 205 89.3
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 3.9e-103 378.3 204 88.7
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 4.7e-101 371.3 204 85.8
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 6.8e-84 314.3 202 73.3
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.5e-83 313.2 203 73.9
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 3.4e-83 312.0 199 73.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 4.6e-80 301.6 203 71.9
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 6.0e-80 301.2 204 71.1
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 3.0e-79 298.9 204 68.1
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 8.6e-79 297.4 202 69.3
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 8.6e-79 297.4 199 71.4
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 3.3e-78 295.4 202 70.8
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 5.6e-78 294.7 193 74.1
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 9.6e-78 293.9 204 70.6
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 1.2e-77 293.5 202 69.8
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 2.1e-77 292.7 202 70.3
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.6e-77 292.0 206 67.0
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 6.2e-77 291.2 205 67.8
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 8.1e-77 290.8 206 67.0
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 8.1e-77 290.8 203 69.0
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 8.1e-77 290.8 202 66.8
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 1.1e-76 290.4 202 69.3
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.4e-76 290.0 204 70.6
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.8e-76 289.7 204 68.1
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 3.1e-76 288.9 202 69.8
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 6.8e-76 287.7 202 68.8
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 2.0e-75 286.2 202 68.8
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 9.9e-75 283.9 213 66.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 9.9e-75 283.9 206 65.0
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 9.9e-75 283.9 206 69.4
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 1.3e-74 283.5 209 67.5
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 2.9e-74 282.3 203 67.5
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 8.4e-74 280.8 202 68.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.2e-72 276.9 190 67.9
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.5e-70 269.2 206 64.1
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.5e-70 269.2 204 62.7
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 4.3e-70 268.5 206 67.0
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 5.6e-70 268.1 208 63.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 5.6e-70 268.1 207 64.3
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 9.6e-70 267.3 201 66.7
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 9.6e-70 267.3 206 66.5
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-69 266.9 201 66.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.1e-69 266.2 204 62.7
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 2.1e-69 266.2 205 64.9
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.8e-69 265.8 201 63.2
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 3.6e-69 265.4 210 62.9
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 3.6e-69 265.4 210 62.9
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 4.8e-69 265.0 206 66.5
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.4e-68 263.5 208 64.4
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 1.4e-68 263.5 204 62.3
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 2.4e-68 262.7 217 61.8
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 3.1e-68 262.3 207 62.8
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.3e-66 256.9 220 59.1
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.7e-66 256.5 202 60.9
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.9e-66 255.8 220 59.1
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.8e-66 255.4 202 61.9
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.8e-66 255.4 202 61.9
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 3.8e-66 255.4 199 60.8
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 3.8e-66 255.4 203 61.1
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 3.8e-66 255.4 211 61.6
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 4.9e-66 255.0 206 63.1
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 8.4e-66 254.2 199 62.3
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 8.4e-66 254.2 202 60.9
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 8.4e-66 254.2 193 63.7
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 8.4e-66 254.2 181 68.5
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.1e-65 253.8 199 60.3
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.4e-65 253.4 211 63.0
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.4e-65 253.4 213 59.2
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.9e-65 253.1 199 61.8
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 5.4e-65 251.5 199 61.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.4e-65 251.5 206 61.2
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.5e-64 248.8 199 61.8
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 4.6e-64 248.4 196 61.7
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 6.0e-64 248.1 199 60.3
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 7.9e-64 247.7 202 61.4
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 1.3e-63 246.9 199 61.3
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 1.7e-63 246.5 197 60.9
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 3.0e-63 245.7 200 60.0
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 8.7e-63 244.2 213 59.2
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.5e-62 243.4 214 58.9
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.3e-62 241.9 198 62.1
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 5.6e-62 241.5 202 59.4
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 9.6e-62 240.7 199 59.8
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 2.8e-61 239.2 164 71.3
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.1e-60 237.3 203 57.6
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.8e-60 236.5 209 55.5
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 3.1e-60 235.7 196 59.2
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 9.0e-60 234.2 211 56.4
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.5e-59 233.4 206 57.3
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.6e-59 232.6 202 57.9
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 9.9e-59 230.7 201 57.2
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.7e-56 222.6 174 62.1
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 3.5e-56 222.2 222 55.0
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.8e-55 219.9 208 53.4
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.0e-55 219.2 173 64.2
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 9.6e-54 214.2 198 55.1
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.2e-51 207.2 188 58.5
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.0e-47 192.6 177 57.6
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 5.1e-47 191.8 156 61.5
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.5e-46 190.3 160 57.5
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.7e-45 185.7 156 59.0
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.8e-44 183.3 205 48.3
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 5.0e-42 175.3 155 58.1
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 1.9e-41 173.3 242 42.6
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 2.5e-41 172.9 208 45.7
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 3.6e-40 169.1 117 65.8
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.9e-38 163.3 113 70.8
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 2.8e-37 159.5 230 39.1
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 8.2e-37 157.9 156 55.1
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 5.3e-36 155.2 195 46.2
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 3.3e-30 136.0 170 46.5
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 2.9e-26 122.9 124 54.0
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.1e-24 116.7 125 48.0
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.7e-24 116.3 126 52.4
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 7.0e-20 101.7 64 75.0
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.2e-14 84.3 51 76.5
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.2e-14 84.3 58 72.4
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.4e-12 76.6 150 38.7
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 9.4e-09 64.7 84 42.9
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.0e-07 61.2 68 47.1
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.4e-07 60.8 114 30.7
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.6e-06 56.6 76 34.2


User provided reference genes

Program Settings