Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 0.0e+00 1076.6 548 100.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 5.7e-303 1043.5 553 96.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 6.6e-299 1030.0 559 94.8
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 1.8e-293 1011.9 552 93.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 4.9e-278 960.7 559 87.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 6.4e-278 960.3 559 88.2
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 4.1e-277 957.6 555 87.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 1.7e-275 952.2 553 87.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 1.7e-275 952.2 559 87.1
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 9.5e-274 946.4 558 86.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 1.2e-273 946.0 553 87.2
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 1.6e-273 945.7 551 86.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 6.2e-273 943.7 552 86.8
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 1.1e-272 943.0 553 87.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.1e-272 941.4 552 87.3
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 8.9e-272 939.9 552 86.4
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 1.5e-271 939.1 552 86.6
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 1.5e-271 939.1 552 85.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 1.5e-271 939.1 558 86.4
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 4.4e-271 937.6 543 87.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 4.4e-271 937.6 552 86.4
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 5.8e-271 937.2 552 86.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 9.9e-271 936.4 553 86.1
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.9e-270 934.1 553 85.9
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.9e-270 934.1 553 85.9
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 1.1e-269 932.9 549 86.5
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 4.1e-269 931.0 555 86.1
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 9.2e-269 929.9 552 85.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 3.5e-268 927.9 552 85.0
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 4.6e-268 927.5 586 82.1
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 4.6e-268 927.5 552 85.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 1.0e-267 926.4 550 86.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 1.3e-267 926.0 552 85.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 1.7e-267 925.6 551 84.6
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 1.7e-267 925.6 560 85.5
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 3.0e-267 924.9 553 85.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.9e-267 924.5 555 84.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 3.3e-266 921.4 552 84.8
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 3.3e-266 921.4 552 85.5
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 7.3e-266 920.2 555 84.9
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 1.2e-265 919.5 552 85.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 2.1e-265 918.7 552 84.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 2.8e-265 918.3 591 80.4
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.4e-264 916.0 553 84.4
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 1.4e-264 916.0 558 84.6
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 2.4e-264 915.2 552 84.1
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 5.2e-264 914.1 552 85.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 6.8e-264 913.7 554 84.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 1.2e-263 912.9 546 84.2
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.2e-263 912.9 554 84.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 1.5e-263 912.5 552 83.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 2.2e-262 908.7 554 84.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-262 908.3 544 85.1
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 1.4e-261 906.0 554 84.3
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 1.9e-261 905.6 553 84.4
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 4.2e-261 904.4 542 86.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 7.1e-261 903.7 547 83.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 2.1e-260 902.1 545 82.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 3.5e-260 901.4 536 85.4
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 4.6e-260 901.0 558 82.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 1.0e-259 899.8 553 83.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 1.3e-259 899.4 547 83.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 1.7e-259 899.0 547 83.9
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.7e-259 899.0 567 82.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 3.0e-259 898.3 553 82.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 3.0e-259 898.3 528 86.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 3.9e-259 897.9 547 83.7
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 3.9e-259 897.9 547 83.7
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.9e-259 897.9 553 83.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 8.7e-259 896.7 547 83.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 1.9e-258 895.6 541 83.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 4.3e-258 894.4 547 83.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 9.6e-258 893.3 587 74.3
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 9.6e-258 893.3 536 85.4
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 2.1e-257 892.1 541 84.3
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.1e-257 892.1 545 84.2
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 2.8e-257 891.7 546 83.3
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 3.6e-257 891.3 552 83.0
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 2.4e-256 888.6 550 81.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 6.9e-256 887.1 551 81.5
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 1.2e-255 886.3 540 84.1
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 2.0e-255 885.6 586 78.3
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 2.6e-255 885.2 543 83.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 2.6e-255 885.2 546 82.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 3.4e-255 884.8 550 83.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 1.3e-254 882.9 540 83.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 4.9e-254 880.9 536 83.6
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.9e-253 879.0 535 84.1
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 4.2e-253 877.9 535 83.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 2.1e-252 875.5 548 82.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 2.7e-252 875.2 519 85.9
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 3.5e-252 874.8 554 82.5
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.8e-252 873.6 546 81.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 1.3e-251 872.8 547 81.4
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 1.3e-251 872.8 547 81.4
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 1.3e-251 872.8 547 81.4
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 1.3e-251 872.8 547 81.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 1.9e-250 869.0 538 82.3
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 2.5e-250 868.6 531 83.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 6.2e-249 864.0 544 82.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 1.8e-248 862.4 536 83.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 6.9e-248 860.5 542 81.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 1.5e-247 859.4 533 83.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 2.0e-247 859.0 538 81.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 1.3e-246 856.3 541 79.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 2.9e-246 855.1 536 82.1
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.9e-246 854.4 541 81.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 6.4e-246 854.0 536 81.7
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 1.9e-245 852.4 545 82.0
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 2.4e-245 852.0 541 79.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 7.1e-245 850.5 538 81.4
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 7.1e-245 850.5 545 82.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 9.3e-245 850.1 536 81.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 2.1e-244 849.0 541 81.0
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 6.0e-244 847.4 535 80.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 7.9e-244 847.0 535 80.9
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 1.0e-243 846.7 542 79.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 1.3e-243 846.3 535 81.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 1.3e-243 846.3 531 81.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 1.1e-242 843.2 531 80.8
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 6.2e-241 837.4 538 81.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 3.4e-239 831.6 572 76.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 1.3e-238 829.7 543 79.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 1.1e-237 826.6 536 80.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 2.7e-236 822.0 544 78.1
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 5.1e-235 817.8 532 79.1
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 6.7e-235 817.4 536 78.4
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 4.3e-234 814.7 537 78.2
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 9.6e-234 813.5 545 76.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 6.5e-230 800.8 535 78.5
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-229 800.0 541 71.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 2.5e-229 798.9 543 76.1
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 5.1e-227 791.2 477 85.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 1.5e-226 789.6 552 76.3
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 9.7e-226 786.9 545 74.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 4.8e-225 784.6 475 85.1
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 6.3e-225 784.3 477 83.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 3.8e-222 775.0 552 76.6
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.3e-217 760.0 536 73.5
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 6.3e-217 757.7 603 68.8
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.8e-216 756.1 547 72.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 8.0e-204 714.1 478 75.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.8e-177 625.9 512 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.3e-161 573.9 354 74.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.9e-158 562.4 286 92.0
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.2e-138 497.7 267 87.3
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-134 483.8 349 77.1
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.1e-134 482.3 360 75.0
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.2e-129 466.8 235 93.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 7.7e-106 388.7 317 70.3
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.1e-94 349.4 259 76.4
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.7e-90 335.5 183 83.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.4e-69 266.5 148 84.5
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 9.8e-45 185.7 163 57.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.2e-43 179.1 159 76.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 6.2e-31 139.8 76 85.5
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.6e-29 132.9 95 71.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.9e-28 131.0 68 92.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.1e-27 126.3 362 30.1
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 9.3e-27 125.9 74 77.0
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 4.3e-24 117.1 390 27.4
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-22 112.5 332 29.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-21 109.0 380 26.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-20 104.8 54 92.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.3e-17 95.5 362 27.1
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-09 67.8 197 27.9
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-08 64.3 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.3e-07 62.4 38 78.9
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 2.1e-07 61.6 132 31.8
Cre16.g690095 Chlamydomonas reinhardtii HOM05D044959 ORTHO05D146302 1.8e-06 58.5 99 39.4


User provided reference genes

Program Settings