Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 4.4e-206 721.1 369 100.0
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 4.1e-103 379.0 226 89.4
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.0e-102 376.7 226 89.4
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 8.5e-93 344.7 226 82.3
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 4.1e-63 246.1 192 67.7
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.6e-62 244.2 229 59.4
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.7e-62 243.4 229 59.8
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 4.6e-62 242.7 198 64.1
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 4.6e-62 242.7 225 59.6
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 4.6e-62 242.7 231 63.2
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.3e-61 241.1 230 59.1
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.7e-61 240.7 229 58.5
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.0e-61 240.0 216 63.4
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 3.9e-61 239.6 217 60.8
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.5e-60 237.7 206 65.5
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 9.5e-60 235.0 230 57.4
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.6e-59 234.2 226 59.3
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.1e-59 233.8 234 57.7
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.8e-59 233.4 225 57.3
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 3.6e-59 233.0 224 58.9
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 4.7e-59 232.6 236 56.4
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 6.2e-59 232.3 228 57.0
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 6.2e-59 232.3 220 58.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 1.1e-58 231.5 257 53.7
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 5.2e-58 229.2 214 58.9
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 5.8e-57 225.7 192 65.6
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 7.6e-57 225.3 220 58.6
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.7e-56 224.2 229 52.8
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.1e-55 221.5 238 54.2
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 1.9e-55 220.7 215 55.3
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 2.4e-55 220.3 197 58.4
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 2.4e-55 220.3 204 59.8
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 7.1e-55 218.8 196 59.2
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.2e-54 218.0 219 56.6
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 4.6e-54 216.1 168 67.3
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 6.0e-54 215.7 221 52.0
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 6.0e-54 215.7 193 59.1
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.0e-53 214.9 205 57.1
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 3.9e-53 213.0 222 53.2
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 3.9e-53 213.0 224 54.5
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 6.6e-53 212.2 198 56.1
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 8.6e-53 211.8 183 59.6
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 1.5e-52 211.1 230 52.2
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.5e-52 211.1 221 54.8
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 2.5e-52 210.3 166 65.1
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 9.6e-52 208.4 211 55.5
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.2e-51 208.0 214 55.6
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 1.2e-51 208.0 183 57.9
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.8e-51 206.8 211 55.0
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 3.6e-51 206.5 218 55.5
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 3.6e-51 206.5 216 53.7
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 4.7e-51 206.1 194 59.8
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 4.7e-51 206.1 202 55.0
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 6.2e-51 205.7 223 52.9
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 6.2e-51 205.7 202 54.0
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 8.1e-51 205.3 222 51.8
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.4e-50 204.5 213 53.1
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.2e-49 201.4 182 58.8
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.5e-49 201.1 220 51.4
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 2.0e-49 200.7 201 55.7
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 2.0e-49 200.7 213 53.1
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 2.6e-49 200.3 198 55.1
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 3.4e-49 199.9 227 51.1
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 5.8e-49 199.1 187 56.7
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 7.6e-49 198.7 191 56.0
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 7.6e-49 198.7 179 57.0
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 7.6e-49 198.7 154 64.3
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.7e-48 197.6 220 50.9
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 2.9e-48 196.8 200 54.5
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 4.9e-48 196.1 220 50.0
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 6.4e-48 195.7 220 51.8
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 4.2e-47 193.0 188 58.0
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 4.2e-47 193.0 175 57.1
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 9.3e-47 191.8 188 58.0
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 9.3e-47 191.8 188 58.0
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 3.5e-46 189.9 188 56.9
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 3.5e-46 189.9 281 46.3
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.0e-45 188.3 188 56.4
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.3e-45 188.0 188 57.4
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.3e-45 188.0 187 55.6
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 6.6e-45 185.7 185 55.7
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 9.6e-44 181.8 229 51.5
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 1.6e-43 181.0 186 52.7
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 8.1e-43 178.7 224 47.8
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.1e-42 178.3 238 46.6
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 7.6e-41 172.2 203 51.2
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.0e-37 161.8 203 44.3
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.1e-36 158.3 187 46.0
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.8e-35 153.7 199 47.7
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.8e-35 153.7 186 45.7
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.6e-35 153.3 190 47.9
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.2e-35 152.5 219 45.2
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 1.1e-31 141.7 114 61.4
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 5.4e-31 139.4 159 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 2.7e-30 137.1 161 44.1
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 8.7e-29 132.1 148 52.0
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 9.0e-26 122.1 159 41.5
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.0e-25 120.9 89 67.4
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.8e-21 107.8 87 60.9
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 3.0e-21 107.1 94 57.4
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 5.1e-21 106.3 231 34.2
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 2.5e-20 104.0 81 67.9
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 2.5e-20 104.0 95 55.8
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 5.1e-13 79.7 53 73.6
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 3.7e-11 73.6 100 46.0
CsaV3_2G028750 Cucumis sativus L. HOM05D007221 ORTHO05D174606 1.0e-08 65.5 158 37.3
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 9.4e-07 58.9 44 63.6


User provided reference genes

Program Settings