Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.7e-79 298.1 147 100.0
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.0e-65 251.9 146 81.5
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 6.7e-65 250.8 148 83.1
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 6.7e-57 224.2 146 78.1
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.2e-32 143.7 151 52.3
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.0e-32 142.9 156 53.8
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 5.7e-32 141.4 154 51.3
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.7e-31 138.7 141 53.9
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.3e-31 137.9 151 50.3
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 6.3e-31 137.9 151 50.3
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.1e-30 137.1 154 49.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.1e-30 135.6 151 49.0
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 7.0e-30 134.4 152 50.0
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.9e-29 131.3 149 46.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 7.7e-29 131.0 149 45.6
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.0e-28 130.6 148 47.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.7e-28 129.8 144 51.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-28 129.4 146 49.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.2e-28 129.4 144 47.2
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.9e-28 129.0 152 48.0
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.8e-28 128.6 147 49.0
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 8.5e-28 127.5 146 48.6
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 8.5e-28 127.5 150 50.0
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.5e-27 126.7 148 47.3
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.9e-27 126.3 158 50.6
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 3.2e-27 125.6 146 46.6
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 7.2e-27 124.4 144 48.6
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.2e-26 123.6 144 44.4
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.6e-26 123.2 142 48.6
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.6e-26 123.2 148 45.3
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.1e-26 121.3 153 46.4
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 6.1e-26 121.3 152 42.8
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.1e-26 121.3 157 44.6
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.0e-25 120.6 152 46.1
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.0e-25 120.6 152 42.8
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.4e-25 120.2 144 46.5
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.8e-25 119.8 137 48.9
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-25 119.8 153 45.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.8e-25 119.8 150 47.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.2e-25 118.2 138 47.1
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.2e-25 118.2 138 47.1
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 6.8e-25 117.9 147 44.9
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 6.8e-25 117.9 142 47.2
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.5e-24 116.7 141 47.5
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.6e-24 115.9 137 46.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 2.6e-24 115.9 149 45.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.6e-24 115.9 141 46.1
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 3.4e-24 115.5 150 42.0
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.4e-24 115.2 152 41.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.4e-24 115.2 131 50.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 7.5e-24 114.4 143 45.5
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 9.8e-24 114.0 148 43.9
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.7e-23 113.2 148 43.9
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.7e-23 113.2 149 41.6
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.2e-23 112.8 147 47.6
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.2e-23 112.8 153 43.8
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.8e-23 112.5 144 47.9
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 3.7e-23 112.1 143 46.2
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 4.8e-23 111.7 147 43.5
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 4.8e-23 111.7 143 43.4
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.3e-23 111.3 147 49.0
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 6.3e-23 111.3 142 44.4
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 6.3e-23 111.3 120 54.2
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.1e-22 110.5 135 44.4
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.1e-22 110.5 142 47.2
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.4e-22 110.2 141 47.5
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.8e-22 109.8 148 41.2
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 3.1e-22 109.0 139 43.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 7.0e-22 107.8 160 42.5
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 9.1e-22 107.5 152 40.1
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.6e-21 106.7 139 49.6
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.0e-21 106.3 156 40.4
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.5e-21 105.1 139 43.2
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 4.5e-21 105.1 139 43.2
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 5.9e-21 104.8 119 47.9
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.9e-20 102.4 138 42.0
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.6e-20 101.3 151 41.1
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 8.6e-20 100.9 129 48.1
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 8.6e-20 100.9 117 48.7
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.5e-19 100.1 137 40.9
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 1.9e-19 99.8 125 45.6
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.9e-19 99.8 135 43.7
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.9e-19 99.8 142 43.0
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.9e-19 99.8 142 43.0
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.9e-19 99.8 137 40.1
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.5e-19 99.4 137 41.6
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 7.2e-19 97.8 139 43.9
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 9.5e-19 97.4 117 47.0
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.2e-18 97.1 138 43.5
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.2e-18 97.1 155 37.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.1e-18 96.3 160 38.8
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.8e-18 95.9 151 39.1
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.6e-18 95.5 148 40.5
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 8.0e-18 94.4 131 42.7
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.0e-17 94.0 140 42.1
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 148 41.2
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 156 39.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 137 41.6
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.8e-17 93.2 140 42.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 2.3e-17 92.8 134 43.3
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 4.0e-17 92.0 134 40.3
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 6.8e-17 91.3 150 38.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 6.8e-17 91.3 128 43.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 8.9e-17 90.9 135 40.7
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 8.9e-17 90.9 137 41.6
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.2e-16 90.5 141 41.1
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.2e-16 90.5 104 46.2
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 3.4e-16 89.0 134 39.6
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.4e-16 89.0 145 37.2
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 3.4e-16 89.0 134 39.6
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 3.4e-16 89.0 134 38.1
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 4.4e-16 88.6 134 40.3
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.4e-16 88.6 153 38.6
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 4.4e-16 88.6 136 41.2
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 4.4e-16 88.6 118 43.2
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 7.5e-16 87.8 134 39.6
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.3e-15 87.0 134 39.6
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.3e-15 87.0 144 41.0
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.7e-15 86.7 147 40.8
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.9e-15 85.1 154 35.7
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 8.3e-15 84.3 104 46.2
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 1.4e-14 83.6 129 38.8
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 4.1e-14 82.0 148 36.5
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.2e-14 80.9 103 49.5
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 9.2e-14 80.9 148 36.5
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.2e-14 80.9 139 36.7
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.0e-13 79.7 114 45.6
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.7e-13 79.3 145 38.6
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.7e-13 79.3 140 39.3
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 7.8e-13 77.8 50 70.0
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 1.0e-12 77.4 118 45.8
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.3e-12 77.0 133 36.1
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.3e-12 77.0 150 35.3
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 2.9e-12 75.9 135 35.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.9e-12 75.9 135 36.3
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.8e-12 75.5 50 68.0
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 3.8e-12 75.5 99 42.4
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.0e-12 75.1 61 59.0
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 8.6e-12 74.3 102 43.1
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 8.6e-12 74.3 102 43.1
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.6e-12 74.3 133 30.1
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.5e-11 73.6 124 40.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.5e-11 73.6 137 37.2
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.3e-11 72.0 138 33.3
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.6e-10 70.1 117 41.0
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 2.1e-10 69.7 107 43.0
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.1e-10 69.7 143 37.8
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.6e-10 68.9 141 34.0
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.1e-10 68.2 40 72.5
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-09 67.4 143 28.0
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.0e-09 67.4 51 60.8
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-09 67.0 130 31.5
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-09 66.2 145 33.1
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-09 66.2 130 30.8
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.3e-09 66.2 147 32.7
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-09 65.9 140 30.7
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.1e-09 65.9 134 32.1
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 4.0e-09 65.5 97 40.2
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.2e-09 65.1 117 37.6
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.8e-09 64.7 156 30.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.0e-08 63.2 115 34.8
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 2.0e-08 63.2 136 33.1
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-08 62.8 148 31.1
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.4e-08 62.4 70 54.3
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-07 60.5 134 28.4
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.1e-06 57.4 122 36.9
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.1e-06 57.4 115 33.9
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.9e-06 56.6 101 34.7
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 1.9e-06 56.6 118 33.1
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.1e-06 55.5 51 60.8
Prupe.2G019400 Prunus persica HOM05D004108 ORTHO05D004849 4.1e-06 55.5 41 63.4


User provided reference genes

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