Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 2.9e-259 898.7 695 100.0
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 5.1e-155 552.4 789 56.0
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.9e-94 350.5 678 46.3
Sed0011246 Sechium edule HOM05D006278 ORTHO05D007526 2.2e-41 174.9 677 38.4
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-40 172.6 227 47.1
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.9e-40 171.8 204 47.1
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 7.1e-40 169.9 248 42.3
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.6e-39 168.7 207 47.8
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 6.0e-39 166.8 249 42.2
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 6.6e-38 163.3 203 45.3
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.1e-37 162.5 180 51.1
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.5e-37 162.2 255 41.2
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 2.5e-37 161.4 203 45.3
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 3.3e-37 161.0 243 41.6
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 2.8e-36 157.9 229 42.4
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.8e-36 157.9 241 45.2
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.5e-34 152.1 245 42.0
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.5e-34 152.1 226 42.0
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.5e-34 152.1 226 42.0
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.6e-34 151.4 188 47.3
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 3.4e-34 151.0 252 39.7
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.3e-33 149.1 238 38.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 4.9e-33 147.1 252 39.7
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 8.4e-33 146.4 256 39.5
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-32 146.0 216 43.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.4e-32 145.6 229 44.1
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 4.2e-32 144.1 242 38.0
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 5.4e-32 143.7 240 41.2
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.1e-32 143.3 221 37.6
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.2e-31 142.5 203 43.3
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.6e-31 142.1 206 42.7
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.7e-31 141.4 244 40.6
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.5e-31 141.0 244 41.0
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 4.6e-31 140.6 211 43.1
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 6.0e-31 140.2 238 41.2
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 6.0e-31 140.2 224 37.5
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 7.9e-31 139.8 238 41.2
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.0e-30 139.4 243 39.1
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.0e-30 139.4 224 37.9
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.3e-30 139.0 258 37.6
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.3e-30 138.3 176 43.2
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 3.0e-30 137.9 242 40.1
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 3.9e-30 137.5 235 39.1
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 5.1e-30 137.1 202 40.6
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 6.7e-30 136.7 203 41.4
MELO3C010954.2 Cucumis melo HOM05D006278 ORTHO05D007526 8.7e-30 136.3 102 74.5
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 8.7e-30 136.3 259 34.7
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.1e-29 136.0 196 43.4
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.5e-29 135.6 247 37.2
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 2.5e-29 134.8 207 42.0
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 4.3e-29 134.0 249 37.3
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.3e-28 132.5 219 39.7
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.1e-28 131.7 177 41.8
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 2.1e-28 131.7 244 37.7
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.1e-28 129.8 234 38.0
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 3.1e-27 127.9 241 36.5
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 3.1e-27 127.9 181 44.2
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.1e-27 127.9 225 38.7
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 9.0e-27 126.3 210 41.9
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 1.2e-26 125.9 198 40.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-26 125.6 225 38.2
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 2.0e-26 125.2 246 36.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 2.6e-26 124.8 169 43.8
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 3.4e-26 124.4 246 37.0
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 5.8e-26 123.6 234 37.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 7.6e-26 123.2 237 35.4
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 9.9e-26 122.9 220 38.2
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 9.9e-26 122.9 232 37.1
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.3e-25 122.5 239 36.0
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.7e-25 122.1 244 38.5
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.7e-25 122.1 231 37.2
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.7e-25 122.1 186 39.8
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 4.9e-25 120.6 243 36.6
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 4.9e-25 120.6 211 39.3
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.4e-25 119.8 255 33.7
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.4e-24 118.2 220 36.4
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.2e-24 117.9 211 37.9
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.6e-23 115.5 235 37.4
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.1e-23 115.2 248 37.5
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.0e-23 113.6 184 40.8
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.5e-21 109.0 180 40.0
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 4.3e-21 107.5 210 38.6
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 7.4e-21 106.7 250 34.4
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 2.1e-20 105.1 219 37.0
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 3.7e-20 104.4 207 37.7
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.8e-20 104.0 232 34.9
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 5.3e-19 100.5 252 32.1
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 6.9e-19 100.1 144 43.8
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.4e-18 97.8 212 35.4
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.6e-18 96.7 252 32.5
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.3e-17 95.9 172 40.7
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 2.2e-17 95.1 249 28.9
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.2e-17 95.1 168 36.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.9e-17 94.7 167 36.5
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 3.8e-17 94.4 189 32.8
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 3.8e-17 94.4 252 33.3
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 4.9e-17 94.0 249 27.7
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 6.5e-17 93.6 166 33.7
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 6.5e-17 93.6 210 30.0
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.9e-16 92.0 176 36.4
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 2.5e-16 91.7 202 32.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 9.3e-16 89.7 190 32.6
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.2e-15 89.4 229 34.5
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.6e-15 89.0 245 33.5
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 2.1e-15 88.6 182 31.9
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.1e-15 88.6 155 38.1
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 6.0e-15 87.0 216 29.2
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.8e-14 85.5 252 31.3
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.9e-14 84.3 234 29.5
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 3.9e-14 84.3 222 31.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.7e-14 83.6 223 32.3
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 8.7e-14 83.2 260 28.8
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.5e-13 81.6 220 30.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.3e-12 79.3 172 31.4
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.8e-12 77.4 206 32.0
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.0e-09 69.7 189 32.8
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.4e-08 65.9 130 37.7
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 7.2e-08 63.5 133 33.1
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.2e-07 62.8 123 32.5
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 2.1e-07 62.0 236 30.1
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-07 62.0 113 38.1
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.6e-07 61.2 154 28.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.0e-06 59.7 133 34.6
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.8e-06 58.9 128 31.2
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.3e-06 58.5 149 29.5
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.3e-06 58.5 121 30.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.1e-06 57.4 107 32.7
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 6.7e-06 57.0 105 36.2
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 6.7e-06 57.0 105 36.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 8.7e-06 56.6 121 32.2
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 8.7e-06 56.6 110 33.6


User provided reference genes

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