Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 2.1e-216 755.4 363 100.0
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 1.7e-186 656.0 364 88.7
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.8e-183 646.0 362 87.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 4.8e-173 611.3 363 82.1
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 7.1e-116 421.4 348 60.1
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 3.5e-115 419.1 342 62.9
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 9.5e-113 411.0 317 64.0
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.8e-111 406.8 345 61.7
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 5.8e-110 401.7 324 61.7
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.2e-107 394.0 312 64.4
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 2.1e-107 393.3 311 63.0
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 2.1e-107 393.3 303 63.4
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.0e-106 391.0 313 62.0
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 3.0e-106 389.4 311 62.4
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 6.6e-106 388.3 303 61.4
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.9e-105 386.7 313 60.1
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 4.3e-105 385.6 313 60.1
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 7.3e-105 384.8 337 60.8
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 1.2e-104 384.0 334 58.4
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.6e-104 383.6 311 60.8
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 2.1e-104 383.3 314 59.6
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 6.2e-104 381.7 361 54.0
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.4e-103 379.8 333 57.1
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 2.4e-103 379.8 343 55.4
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 3.1e-103 379.4 322 59.6
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 5.2e-103 378.6 324 57.7
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.2e-102 377.5 329 58.1
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.0e-102 376.7 329 56.8
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 2.0e-102 376.7 328 57.6
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.3e-101 374.0 328 57.6
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.7e-101 373.6 307 59.6
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.7e-101 373.6 330 57.6
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.7e-101 373.6 335 56.1
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.1e-100 370.9 323 59.4
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.4e-100 370.5 320 56.6
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 5.4e-100 368.6 329 55.0
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 9.3e-100 367.9 341 56.0
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 1.6e-99 367.1 342 55.6
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 7.8e-99 364.8 323 56.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 7.8e-99 364.8 301 59.8
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 1.0e-98 364.4 359 52.1
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.3e-98 364.0 351 54.1
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.7e-98 363.6 337 54.6
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.3e-98 363.2 340 55.6
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 2.3e-98 363.2 332 56.0
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 2.3e-98 363.2 304 59.2
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 3.0e-98 362.8 312 58.3
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 8.7e-98 361.3 336 55.1
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 2.5e-97 359.8 324 54.9
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.6e-96 357.1 329 54.4
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.6e-96 357.1 359 51.5
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.6e-96 357.1 323 54.5
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.1e-96 356.7 307 58.3
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 2.8e-96 356.3 349 53.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.1e-95 354.4 338 53.0
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.8e-95 353.6 307 55.7
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.8e-95 353.6 333 52.9
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 2.4e-95 353.2 329 53.8
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 4.0e-95 352.4 323 56.3
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 6.9e-95 351.7 315 56.8
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.5e-94 350.5 350 53.1
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 2.0e-94 350.1 303 55.8
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 2.9e-93 346.3 283 62.5
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 8.4e-93 344.7 283 60.1
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.1e-92 344.4 351 52.4
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.2e-92 342.8 347 52.4
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 2.1e-91 340.1 340 52.6
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 3.5e-91 339.3 343 50.1
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 3.5e-91 339.3 284 57.7
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 4.6e-91 339.0 344 51.7
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 6.0e-91 338.6 310 57.4
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 6.7e-90 335.1 307 56.4
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 8.7e-90 334.7 260 61.9
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.1e-89 334.3 332 56.0
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 4.3e-89 332.4 330 53.3
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.3e-89 332.4 260 61.2
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 7.4e-89 331.6 287 58.2
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 1.6e-88 330.5 327 52.3
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 2.4e-87 326.6 326 52.5
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.0e-86 323.6 307 55.0
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 2.6e-86 323.2 333 50.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.7e-85 320.5 274 58.8
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 4.9e-85 318.9 321 52.3
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 4.6e-83 312.4 345 49.3
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.9e-82 309.3 252 60.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.9e-82 309.3 252 60.3
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 5.1e-82 308.9 251 60.2
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 9.6e-81 304.7 249 59.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 3.4e-78 296.2 255 60.4
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 2.9e-77 293.1 402 41.0
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 4.9e-77 292.4 248 61.7
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.1e-75 287.0 304 48.7
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 5.1e-74 282.3 307 47.9
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 3.8e-69 266.2 319 44.2
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 7.9e-67 258.5 327 43.1
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.8e-63 247.3 314 47.5
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 1.4e-58 231.1 313 42.8
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.3e-58 230.3 192 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.1e-57 228.0 305 43.6
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 7.7e-54 215.3 299 39.1
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 5.0e-53 212.6 218 51.4
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 5.5e-52 209.1 339 38.3
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.5e-49 201.1 282 43.3
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 9.1e-47 191.8 172 54.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.9e-45 186.8 383 33.7
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 1.3e-40 171.4 401 31.7
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.4e-26 124.8 177 38.4
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.4e-26 124.8 325 30.5
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.4e-25 119.8 124 49.2
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 4.4e-25 119.8 239 32.6
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 3.1e-23 113.6 106 50.9
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 7.0e-23 112.5 113 49.6
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 6.8e-18 95.9 120 41.7
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.0e-17 94.4 101 45.5
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 2.7e-06 57.4 51 54.9


User provided reference genes

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