Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.4e-128 463.0 233 100.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.2e-116 423.3 234 90.2
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 5.2e-112 407.9 233 86.7
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.7e-94 348.6 220 75.9
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.6e-92 341.7 221 73.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.0e-91 340.5 218 75.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.3e-91 340.1 221 73.3
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.1e-90 337.0 217 73.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 5.6e-90 334.7 218 73.4
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.2e-89 333.6 216 72.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.6e-89 333.2 218 72.9
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.6e-89 333.2 218 72.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.6e-89 333.2 221 71.5
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.8e-89 332.4 221 70.6
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.8e-89 332.4 221 71.9
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.8e-89 332.4 221 71.9
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.1e-89 330.9 218 72.5
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-88 330.5 223 71.3
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.1e-88 330.5 221 71.5
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.4e-88 330.1 216 70.4
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.1e-88 328.9 220 70.9
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.0e-88 328.6 218 72.9
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.2e-88 328.2 223 70.4
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 6.8e-88 327.8 221 71.5
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 6.8e-88 327.8 223 70.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.6e-87 325.9 220 70.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.4e-87 325.5 221 69.7
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 9.8e-87 323.9 213 72.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 9.8e-87 323.9 217 71.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-86 323.2 224 69.2
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.2e-86 322.8 220 71.4
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.9e-86 322.4 220 69.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.9e-86 322.4 216 70.4
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 3.7e-86 322.0 217 71.0
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 3.7e-86 322.0 223 67.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 6.4e-86 321.2 221 69.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 8.3e-86 320.9 220 70.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 8.3e-86 320.9 216 69.4
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 8.3e-86 320.9 226 70.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 8.3e-86 320.9 225 67.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 8.3e-86 320.9 223 68.2
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.4e-85 320.1 224 66.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.9e-85 319.7 223 67.7
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.9e-85 319.7 223 67.3
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.4e-85 319.3 219 69.9
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.4e-85 319.3 221 68.8
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.4e-85 319.3 218 70.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.2e-85 318.9 214 72.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 9.2e-85 317.4 221 68.3
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 9.2e-85 317.4 221 68.8
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 9.2e-85 317.4 225 69.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.7e-84 315.8 220 69.5
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 6.0e-84 314.7 217 69.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 6.0e-84 314.7 217 69.1
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.0e-84 314.7 220 66.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.3e-83 313.5 222 68.5
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.7e-83 313.2 216 70.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.3e-83 312.8 222 68.0
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.3e-83 312.8 217 68.7
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.9e-83 312.0 220 67.7
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.1e-83 311.6 217 68.2
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.5e-82 310.1 217 66.8
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.9e-82 309.7 252 61.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.9e-82 309.7 221 66.5
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.5e-82 309.3 218 69.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.3e-82 308.9 220 66.4
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.3e-82 308.9 217 68.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.2e-81 307.0 167 88.0
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.1e-81 306.2 222 66.2
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.8e-81 305.8 217 67.7
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.8e-81 305.8 222 68.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.8e-81 305.8 218 68.3
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.1e-81 304.3 222 67.1
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 8.1e-81 304.3 220 67.7
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 8.1e-81 304.3 219 67.1
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.8e-80 303.1 221 65.2
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.3e-80 302.8 221 64.7
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 3.1e-80 302.4 217 65.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.0e-80 302.0 217 66.4
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 6.8e-80 301.2 221 66.5
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-79 300.4 217 65.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-79 299.7 217 65.4
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-79 299.7 217 65.4
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.4e-79 298.9 217 65.4
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.4e-79 298.9 217 65.4
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 4.4e-79 298.5 200 70.5
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 4.4e-79 298.5 220 65.9
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.9e-78 295.8 248 59.7
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 8.4e-78 294.3 217 65.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.4e-77 293.5 218 64.2
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.4e-77 292.7 202 71.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 3.2e-77 292.4 224 69.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 4.1e-77 292.0 217 63.1
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.1e-77 292.0 217 64.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.5e-76 288.9 217 62.2
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 6.0e-76 288.1 277 54.5
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.1e-75 285.0 219 67.1
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-74 283.9 249 59.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.5e-74 282.7 220 64.1
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.5e-74 282.7 211 65.4
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.5e-74 282.7 211 65.4
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 4.3e-74 282.0 214 65.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.3e-74 281.2 217 63.1
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 9.6e-74 280.8 212 63.2
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.2e-73 280.4 186 72.6
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 195 68.2
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.6e-73 280.0 183 74.3
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-72 277.3 213 60.6
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.1e-72 277.3 213 60.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.1e-72 275.8 212 62.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.1e-72 275.8 213 60.1
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-71 273.9 214 60.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.2e-71 273.9 214 60.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-71 273.1 214 60.3
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-71 273.1 214 60.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.0e-71 273.1 214 60.3
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.8e-71 271.6 220 60.9
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.7e-70 270.0 216 60.6
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.9e-70 269.2 216 59.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.9e-70 269.2 185 69.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.4e-69 266.9 212 62.7
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 4.2e-69 265.4 222 59.0
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 4.2e-69 265.4 222 59.0
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 8.7e-67 257.7 215 57.7
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.1e-66 257.3 178 73.6
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.5e-66 256.9 212 59.4
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.1e-64 249.2 188 66.5
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.7e-62 243.4 188 61.7
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.2e-61 238.8 198 54.5
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.5e-60 235.7 152 70.4
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 5.1e-59 231.9 149 73.2
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.7e-59 231.1 220 53.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 8.1e-57 224.6 208 52.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.1e-56 224.2 173 64.2
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 4.0e-56 222.2 151 70.9
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.3e-56 221.9 232 52.6
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-54 216.9 193 55.4
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 2.7e-52 209.5 206 48.1
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.9e-52 208.0 223 50.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.8e-48 196.8 217 50.2
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.8e-46 189.1 210 43.3
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.5e-45 186.4 210 44.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.8e-41 172.9 144 50.7
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 4.5e-39 165.6 112 67.9
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 5.9e-39 165.2 116 63.8
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-38 163.7 116 68.1
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 4.6e-36 155.6 171 46.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.0e-30 135.6 123 57.7
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 2.1e-28 130.2 90 67.8
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.4e-27 127.5 147 40.8
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-26 123.6 84 70.2
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.7e-22 110.5 203 32.0
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.2e-19 99.0 150 40.0
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.2e-19 99.0 150 40.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 2.0e-18 97.1 67 65.7
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 3.3e-18 96.3 70 64.3
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 7.4e-18 95.1 66 74.2
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.7e-17 92.8 76 59.2
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.2e-15 87.8 71 59.2
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.0e-10 70.5 47 66.0
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 3.5e-07 59.7 37 70.3
Pp3c3_6140 Physcomitrium patens HOM05D001742 ORTHO05D001689 7.7e-07 58.5 245 24.9
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-06 57.4 50 58.0


User provided reference genes

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