Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.2e-178 629.8 322 100.0
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.5e-154 549.7 366 81.7
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 9.9e-154 547.0 366 80.6
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 4.2e-152 541.6 366 78.7
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 3.0e-110 402.5 360 61.7
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 3.0e-110 402.5 362 62.4
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 8.8e-110 401.0 370 61.4
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 8.8e-110 401.0 361 61.8
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 2.5e-109 399.4 318 68.2
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.8e-108 396.0 372 59.7
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 5.3e-107 391.7 367 60.5
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 5.3e-107 391.7 360 61.4
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 6.9e-107 391.3 365 62.7
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.0e-106 389.8 361 60.7
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 7.7e-106 387.9 351 61.0
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.5e-104 381.7 351 60.4
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.2e-103 380.6 361 62.0
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.0e-102 377.5 366 60.4
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 3.9e-102 375.6 363 60.1
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 6.7e-102 374.8 362 59.4
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 6.7e-102 374.8 346 59.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 2.0e-101 373.2 361 58.2
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 5.7e-101 371.7 354 60.5
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 7.4e-101 371.3 360 59.2
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 6.3e-100 368.2 361 56.0
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 4.1e-99 365.5 366 55.2
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 4.5e-98 362.1 361 54.8
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.2e-97 359.8 363 56.5
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 2.9e-97 359.4 308 64.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 3.8e-97 359.0 315 61.3
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 5.0e-97 358.6 342 57.0
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 6.5e-97 358.2 342 57.0
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 3.2e-96 355.9 313 60.4
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 5.5e-96 355.1 367 55.3
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.5e-96 355.1 374 56.7
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 5.5e-96 355.1 345 56.5
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.2e-95 354.0 360 56.4
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.2e-95 354.0 341 58.4
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.6e-95 353.6 325 58.8
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 2.1e-95 353.2 340 56.2
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 6.1e-95 351.7 356 55.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 8.0e-95 351.3 325 58.5
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 8.0e-95 351.3 325 58.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.0e-94 350.9 342 56.7
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.4e-94 350.5 313 63.3
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.4e-94 350.5 322 59.0
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 2.3e-94 349.7 295 64.1
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 3.0e-94 349.4 342 55.8
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 4.0e-94 349.0 314 58.9
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 4.0e-94 349.0 341 58.1
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 6.7e-94 348.2 313 60.4
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 6.7e-94 348.2 341 57.8
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.5e-93 347.1 321 58.9
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.0e-93 346.7 359 56.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.6e-93 346.3 306 63.7
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.6e-93 346.3 390 53.8
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.6e-93 346.3 290 64.8
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.3e-93 345.9 288 63.9
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.4e-93 345.5 349 57.3
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 4.4e-93 345.5 293 63.8
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 5.7e-93 345.1 369 53.9
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 5.7e-93 345.1 314 58.0
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 7.5e-93 344.7 352 57.1
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 7.5e-93 344.7 347 56.2
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 9.7e-93 344.4 312 59.9
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.3e-92 344.0 295 63.1
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.7e-92 343.6 318 61.0
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 2.8e-92 342.8 352 53.7
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.1e-91 340.9 342 57.6
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.4e-91 340.5 309 60.8
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.8e-91 340.1 302 62.3
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 3.1e-91 339.3 294 61.2
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 9.1e-91 337.8 355 55.5
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.2e-90 337.4 303 61.4
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.2e-87 327.4 332 55.4
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 4.7e-87 325.5 279 63.8
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 2.3e-86 323.2 340 52.9
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 9.8e-85 317.8 311 55.6
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 1.7e-84 317.0 265 66.0
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 2.8e-84 316.2 401 51.4
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 2.8e-84 316.2 291 59.8
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.7e-81 307.0 293 59.4
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.9e-80 303.5 296 57.1
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 5.5e-80 302.0 300 55.3
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 8.0e-79 298.1 510 39.0
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 3.4e-77 292.7 293 53.6
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 3.1e-75 286.2 531 37.3
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.0e-70 271.2 538 36.6
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 4.0e-70 269.2 274 56.6
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.2e-69 267.7 265 54.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 9.2e-67 258.1 386 46.6
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 2.0e-66 256.9 282 54.3
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.7e-65 253.8 278 50.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 3.6e-63 246.1 234 56.4
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.0e-62 244.6 228 59.2
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.4e-62 244.2 290 52.1
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 6.8e-62 241.9 284 47.9
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 6.8e-62 241.9 276 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 9.8e-61 238.0 280 47.1
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.4e-59 234.2 287 47.7
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 1.6e-58 230.7 299 44.8
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.1e-51 208.0 184 61.4
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.1e-43 181.4 172 59.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 9.2e-43 178.3 168 60.7
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 9.6e-40 168.3 297 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.2e-36 157.1 198 46.0
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.4e-35 154.5 339 37.5
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 3.9e-33 146.4 303 33.7
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 2.6e-29 133.7 193 39.4
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 4.5e-29 132.9 142 51.4
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 4.5e-29 132.9 99 70.7
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.3e-28 131.3 119 54.6
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 9.3e-27 125.2 105 59.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.3e-25 121.3 77 76.6
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.0e-25 120.2 75 77.3
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 5.6e-24 115.9 127 51.2
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.3e-23 114.8 145 46.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.0e-21 107.5 129 50.4
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 5.8e-21 105.9 184 39.1
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 7.6e-21 105.5 92 58.7
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 8.7e-17 92.0 77 57.1
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.4e-16 89.0 54 77.8
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.0e-12 78.6 105 49.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-10 70.5 57 68.4
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-10 70.5 57 68.4
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-10 70.5 57 68.4
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-10 70.5 57 68.4
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.7e-10 70.5 57 68.4
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.5e-10 70.1 57 68.4
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.6e-10 69.7 57 68.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.6e-10 69.7 57 68.4


User provided reference genes

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