Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 0.0e+00 1731.1 860 100.0
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 0.0e+00 1471.8 867 84.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 0.0e+00 1403.7 868 80.6
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 0.0e+00 1236.9 897 72.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.1e-263 913.7 907 53.6
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.2e-262 910.2 895 53.5
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.7e-248 863.2 896 51.8
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.7e-248 863.2 870 52.8
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.2e-245 852.8 870 52.0
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 6.5e-245 851.3 913 50.2
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 6.8e-242 841.3 873 52.3
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.2e-241 840.5 886 51.0
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.5e-241 840.1 877 51.1
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 7.0e-239 831.2 923 48.2
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.0e-238 829.7 918 48.6
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 4.3e-236 822.0 913 48.8
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 3.7e-232 808.9 864 49.5
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.9e-232 808.5 890 50.2
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.4e-231 807.0 889 49.7
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.0e-230 803.1 868 50.8
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.0e-230 803.1 896 49.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.5e-230 802.4 889 50.2
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 4.6e-230 802.0 892 50.0
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 6.6e-229 798.1 865 48.7
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.1e-228 797.3 868 50.0
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 4.3e-228 795.4 865 48.3
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.8e-227 792.7 892 49.3
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.8e-226 790.0 862 48.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-226 789.6 875 46.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 7.5e-225 784.6 874 47.5
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.7e-224 783.5 867 48.1
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.4e-223 779.6 869 47.6
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 7.8e-222 774.6 1110 42.7
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 7.3e-220 768.1 798 52.1
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 7.5e-217 758.1 910 45.4
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.4e-215 753.8 862 46.4
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 5.4e-215 751.9 1107 41.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 2.3e-210 736.5 855 47.0
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 8.4e-208 728.0 913 45.0
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 8.4e-208 728.0 922 44.4
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.2e-207 726.1 881 45.6
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.2e-206 724.2 873 45.6
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 3.5e-206 722.6 884 45.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 4.6e-206 722.2 886 44.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.9e-204 716.8 883 45.2
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 7.3e-204 714.9 886 44.4
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 3.6e-203 712.6 884 45.1
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.6e-203 712.6 896 44.5
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 6.2e-203 711.8 872 47.1
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 6.9e-202 708.4 899 43.7
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 8.9e-202 708.0 878 46.1
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 9.9e-201 704.5 886 44.4
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.2e-200 703.4 1109 39.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 3.8e-200 702.6 892 43.9
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 8.4e-200 701.4 910 44.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.1e-199 701.0 1111 38.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.4e-199 699.9 892 43.8
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 5.4e-199 698.7 894 43.8
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 9.3e-199 698.0 897 43.8
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.7e-197 693.7 893 44.1
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 2.3e-197 693.3 899 42.9
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 6.2e-195 685.3 879 42.7
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 9.9e-193 677.9 860 44.4
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 9.9e-193 677.9 1094 37.6
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 9.3e-191 671.4 1097 39.1
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.2e-190 671.0 775 45.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.1e-190 670.2 876 42.7
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 3.0e-189 666.4 895 42.9
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.0e-189 666.4 880 44.0
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 2.6e-185 653.3 861 44.5
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 6.4e-184 648.7 818 44.6
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-183 647.5 882 43.0
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.0e-181 641.3 865 42.0
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-181 641.0 871 42.9
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.0e-181 639.8 645 50.4
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 4.3e-180 636.0 779 45.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.9e-176 623.2 773 44.0
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.9e-176 622.5 824 42.6
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 3.3e-172 609.8 625 50.9
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 6.3e-171 605.5 1097 35.0
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 4.5e-169 599.4 1057 37.3
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.9e-168 596.7 906 40.0
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 3.8e-168 596.3 1054 36.5
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 3.2e-167 593.2 1080 34.8
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.0e-165 588.2 778 43.6
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.9e-159 567.4 834 41.4
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.0e-156 557.4 966 34.7
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.8e-155 553.5 745 43.1
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.1e-138 496.9 1021 31.7
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.6e-137 494.6 491 54.0
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.3e-136 491.5 959 34.2
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 4.2e-135 486.5 693 41.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 6.8e-133 479.2 499 49.5
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.4e-132 476.9 683 40.1
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.9e-128 463.8 867 34.4
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.0e-121 441.0 579 41.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.8e-117 427.9 538 43.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.8e-117 427.9 950 31.6
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 6.6e-112 409.5 937 31.8
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.9e-111 407.9 531 44.8
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.0e-109 400.2 588 38.1
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 5.2e-109 399.8 499 44.7
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.4e-106 391.0 775 33.7
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 7.3e-103 379.4 593 38.1
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 4.4e-100 370.2 926 29.3
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.7e-96 358.2 377 49.3
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 4.7e-94 350.1 1184 26.9
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 7.8e-89 332.8 936 28.6
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.8e-77 295.0 392 43.4
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.0e-76 291.6 461 39.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.4e-68 264.2 678 30.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 3.8e-67 260.8 364 38.7
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 4.8e-62 243.8 365 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.9e-58 231.9 945 25.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.0e-57 226.9 619 27.9
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 8.7e-56 223.0 301 44.2
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.1e-55 222.6 155 69.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 9.7e-55 219.5 303 47.2
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 3.1e-53 214.5 151 64.9
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 9.0e-53 213.0 263 45.6
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.3e-51 209.1 199 53.3
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 5.3e-45 187.2 165 54.5
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.2e-44 186.0 165 53.9
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.9e-42 178.7 265 40.0
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 4.2e-42 177.6 151 56.3
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 7.0e-37 160.2 280 35.4
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 2.0e-31 142.1 838 22.1
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 1.7e-27 129.0 226 33.2
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 9.4e-26 123.2 88 63.6
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 4.7e-25 120.9 105 54.3
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.8e-22 111.7 118 50.0
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 3.5e-20 104.8 85 61.2
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.5e-19 100.1 94 48.9
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 7.0e-13 80.5 139 35.3
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.8e-09 68.6 162 32.1
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 8.3e-06 57.0 29 72.4


User provided reference genes

Program Settings