Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.5e-272 941.0 482 100.0
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 8.4e-157 557.8 367 82.3
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.5e-155 552.4 367 82.0
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 6.3e-128 461.8 374 69.8
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.6e-78 297.7 368 48.9
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 4.3e-76 289.7 369 48.2
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.6e-76 289.3 375 47.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 5.2e-74 282.7 380 48.7
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.2e-72 277.3 379 48.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.4e-71 273.9 377 45.6
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 9.2e-71 271.9 357 45.9
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 7.8e-70 268.9 372 44.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.3e-68 263.1 376 46.5
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.2e-67 261.5 377 45.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 8.9e-66 255.4 389 44.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.5e-65 254.6 383 42.0
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.8e-65 251.9 377 41.6
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-64 251.5 371 43.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.9e-64 250.4 330 44.2
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.4e-64 249.2 377 41.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.4e-63 248.1 364 43.7
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.9e-63 247.7 377 41.1
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 5.4e-63 246.1 367 42.5
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 5.4e-63 246.1 385 41.3
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.1e-63 245.7 377 41.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 9.2e-63 245.4 376 43.1
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 2.1e-62 244.2 330 45.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 6.6e-61 239.2 371 42.6
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.6e-61 238.8 377 41.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.3e-60 236.9 381 41.7
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.3e-60 236.9 331 45.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.3e-60 236.5 395 40.3
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 7.3e-60 235.7 379 40.9
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.6e-59 233.4 376 40.7
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.7e-59 233.0 332 44.3
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.8e-58 231.1 373 41.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.3e-58 230.7 369 42.0
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-57 228.0 376 39.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.0e-57 227.6 386 39.4
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 7.6e-57 225.7 386 39.4
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.7e-56 223.4 378 41.5
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.3e-56 222.2 330 42.1
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 7.1e-55 219.2 381 39.1
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.2e-54 218.4 381 39.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.6e-54 218.0 381 39.1
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.7e-54 217.2 375 40.0
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.7e-54 217.2 375 39.2
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.5e-54 216.9 377 40.8
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 4.6e-54 216.5 371 38.3
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 6.0e-54 216.1 377 38.5
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.3e-53 214.2 366 38.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.3e-52 210.3 366 36.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 5.6e-52 209.5 377 38.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 7.3e-52 209.1 370 39.2
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.6e-51 206.8 358 37.4
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 4.7e-51 206.5 369 37.4
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.1e-50 205.3 411 36.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.8e-50 204.5 378 38.6
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.4e-50 204.1 376 34.8
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.4e-49 199.9 368 36.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 5.8e-49 199.5 377 38.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.9e-48 197.2 417 35.3
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.8e-48 196.8 368 34.8
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.9e-47 194.5 371 37.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.4e-47 194.1 379 38.0
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 4.2e-47 193.4 369 35.5
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 9.3e-47 192.2 389 34.7
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.2e-46 191.8 372 37.9
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 6.0e-46 189.5 372 34.9
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.7e-45 188.0 315 38.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 3.0e-45 187.2 330 40.6
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.6e-43 181.4 374 34.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 8.1e-43 179.1 330 38.2
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 2.4e-42 177.6 365 33.7
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.5e-41 174.9 376 33.8
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 3.4e-41 173.7 329 34.3
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.4e-41 173.3 380 34.7
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 5.8e-41 172.9 311 36.3
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 7.6e-41 172.6 363 34.4
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.3e-40 171.8 371 35.0
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.7e-40 171.4 378 33.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.8e-40 170.2 368 32.3
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.9e-40 169.9 373 33.2
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.1e-39 168.7 364 35.4
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.9e-39 167.9 378 34.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 9.3e-39 165.6 371 34.0
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 3.5e-38 163.7 361 34.1
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 4.6e-38 163.3 367 32.2
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.3e-37 161.8 371 31.3
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.3e-37 161.8 375 34.4
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.7e-37 161.4 370 30.8
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.7e-37 161.4 359 32.6
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.9e-37 160.2 369 34.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 5.1e-37 159.8 338 33.7
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 8.7e-37 159.1 370 33.0
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 3.3e-36 157.1 343 33.2
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.3e-36 156.8 327 33.0
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 7.3e-36 156.0 333 34.5
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.3e-35 155.2 331 35.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-34 152.1 297 36.4
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 4.0e-34 150.2 373 30.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 5.3e-34 149.8 238 39.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.5e-33 148.3 297 34.3
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.4e-33 147.1 373 29.8
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.6e-33 146.0 374 29.9
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.3e-32 145.2 273 35.5
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.9e-31 141.4 329 31.9
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.6e-30 138.3 283 33.6
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 5.6e-28 129.8 384 30.5
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 9.6e-28 129.0 249 31.7
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.2e-27 126.3 372 28.2
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.4e-26 125.2 398 29.9
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 6.9e-26 122.9 361 28.0
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.0e-25 121.3 167 46.7
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.0e-25 121.3 390 29.0
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 5.8e-25 119.8 290 31.7
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.0e-24 119.0 386 28.2
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.5e-24 116.3 372 27.4
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 8.4e-24 115.9 207 37.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 7.9e-22 109.4 264 29.9
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.8e-21 108.2 383 27.9
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.1e-20 105.5 198 36.4
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 7.4e-20 102.8 183 37.7
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 9.6e-20 102.4 114 46.5
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.1e-18 99.0 332 26.2
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 4.5e-17 93.6 289 27.3
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.4e-15 88.6 366 26.5
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 4.2e-15 87.0 229 32.3
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 5.5e-15 86.7 398 25.6
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 7.2e-15 86.3 103 42.7
MELO3C030325.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.6e-14 85.1 46 87.0
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.8e-13 81.6 324 23.1
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.8e-13 81.6 377 26.5
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 6.7e-13 79.7 388 25.5
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.5e-12 78.6 136 39.7
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.6e-11 75.1 209 28.2
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.7e-08 65.1 232 27.2
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 2.5e-07 61.2 281 24.2


User provided reference genes

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