Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.2e-111 405.6 203 100.0
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 4.4e-75 285.0 204 75.5
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 2.7e-64 249.2 209 68.9
MELO3C011356.2 Cucumis melo HOM05D007731 ORTHO05D008483 1.6e-48 196.8 146 72.6
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.3e-34 150.6 210 50.0
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 1.1e-33 147.5 239 45.2
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 6.3e-29 131.7 200 47.5
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 8.2e-29 131.3 257 38.9
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 1.2e-27 127.5 200 44.0
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 4.5e-27 125.6 163 48.5
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 1.7e-26 123.6 187 48.1
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.7e-26 123.6 235 42.1
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 2.2e-26 123.2 255 38.4
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 2.2e-26 123.2 213 44.1
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 2.9e-26 122.9 201 44.3
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 5.0e-26 122.1 233 41.2
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 6.5e-26 121.7 167 51.5
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 1.1e-25 120.9 196 46.4
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 1.9e-25 120.2 187 45.5
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.9e-25 120.2 244 39.8
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.2e-25 119.4 231 41.6
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.2e-25 119.4 223 42.2
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.5e-25 118.6 176 46.6
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 9.3e-25 117.9 231 41.1
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 1.6e-24 117.1 216 41.7
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.1e-24 116.7 242 40.1
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 2.7e-24 116.3 138 50.7
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 2.7e-24 116.3 224 39.3
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 7.9e-24 114.8 180 47.2
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 1.8e-23 113.6 285 37.2
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 6.7e-23 111.7 244 38.5
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 8.7e-23 111.3 244 38.9
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 1.1e-22 110.9 196 42.9
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.5e-22 110.5 208 39.9
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 1.9e-22 110.2 208 40.9
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 2.5e-22 109.8 200 41.0
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 3.3e-22 109.4 219 40.2
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 4.3e-22 109.0 217 42.9
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 5.7e-22 108.6 198 42.4
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 7.4e-22 108.2 225 39.1
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 9.7e-22 107.8 223 40.8
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.3e-21 107.5 185 44.3
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 1.3e-21 107.5 228 38.6
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.3e-21 107.5 239 38.9
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 2.2e-21 106.7 220 38.2
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 3.7e-21 105.9 197 42.1
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 8.2e-21 104.8 185 43.8
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 8.2e-21 104.8 201 40.3
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.8e-20 103.6 210 40.5
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.8e-20 103.6 190 42.1
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 2.4e-20 103.2 186 42.5
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 1.2e-19 100.9 170 40.0
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.2e-19 100.9 232 37.5
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.2e-19 100.9 232 37.5
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.6e-19 99.8 229 37.6
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 3.4e-19 99.4 201 38.8
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 7.7e-19 98.2 184 40.8
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 7.7e-19 98.2 184 41.3
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.3e-18 97.4 226 38.1
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 5.0e-18 95.5 194 40.7
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.4e-17 94.0 181 42.0
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 2.5e-17 93.2 128 51.6
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 3.2e-17 92.8 193 38.3
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 2.7e-16 89.7 226 37.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 4.6e-16 89.0 204 40.2
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 2.3e-15 86.7 245 33.1
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 2.5e-14 83.2 197 37.6
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 5.7e-14 82.0 198 33.3
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 9.7e-14 81.3 124 44.4
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 1.3e-13 80.9 145 44.8
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 4.8e-13 79.0 210 36.2
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 1.8e-12 77.0 192 36.5
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 3.1e-12 76.3 193 39.4
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 9.1e-12 74.7 193 35.2
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 9.1e-12 74.7 234 31.2
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-11 73.9 215 34.0
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-11 73.9 228 32.5
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 2.6e-11 73.2 193 37.8
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 3.4e-11 72.8 201 32.3
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.9e-11 72.0 96 46.9
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.7e-10 70.5 98 46.9
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 6.5e-10 68.6 96 45.8
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.1e-09 67.8 186 34.4
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.1e-09 67.8 96 41.7
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 1.4e-09 67.4 192 36.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.9e-09 67.0 95 44.2
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 3.2e-09 66.2 67 58.2
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.2e-09 66.2 96 42.7
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 4.2e-09 65.9 133 36.8
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.2e-09 65.9 96 42.7
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.2e-09 65.9 96 42.7
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.2e-09 65.9 161 34.8
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.5e-09 65.5 178 35.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 9.4e-09 64.7 94 44.7
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 9.4e-09 64.7 96 41.7
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 9.4e-09 64.7 155 36.1
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 9.4e-09 64.7 152 34.9
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-08 64.3 139 36.7
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.6e-08 63.9 133 36.1
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 2.1e-08 63.5 45 66.7
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 2.1e-08 63.5 96 43.8
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 2.7e-08 63.2 178 34.3
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.7e-08 63.2 133 36.8
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 2.7e-08 63.2 162 35.8
Phvul.001G005800 Phaseolus vulgaris HOM05D032462 ORTHO05D035917 2.7e-08 63.2 163 32.5
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.7e-08 63.2 158 33.5
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 3.6e-08 62.8 133 35.3
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.7e-08 62.4 114 37.7
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 4.7e-08 62.4 119 37.0
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 7.9e-08 61.6 157 35.0
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 7.9e-08 61.6 133 36.1
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.0e-07 61.2 98 39.8
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.4e-07 60.8 155 30.3
Glyma.14G220100 Glycine max HOM05D032462 ORTHO05D035917 1.4e-07 60.8 195 30.8
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 1.4e-07 60.8 96 42.7
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 1.8e-07 60.5 150 34.0
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 3.0e-07 59.7 155 33.5
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 3.0e-07 59.7 181 34.3
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 3.9e-07 59.3 118 36.4
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.9e-07 59.3 96 38.5
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.9e-07 59.3 137 34.3
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.9e-07 59.3 96 38.5
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.9e-07 59.3 96 38.5
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.9e-07 59.3 137 34.3
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.9e-07 59.3 127 38.6
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 5.1e-07 58.9 159 30.8
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 5.1e-07 58.9 184 34.2
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.7e-07 58.5 137 34.3
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 6.7e-07 58.5 106 35.8
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 8.8e-07 58.2 127 36.2
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.1e-06 57.8 115 36.5
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 1.5e-06 57.4 173 33.5
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 1.5e-06 57.4 45 62.2
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.5e-06 57.4 172 33.1
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 2.0e-06 57.0 167 34.1
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 2.0e-06 57.0 186 30.1
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-06 57.0 186 30.1
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-06 57.0 186 30.1
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.6e-06 56.6 124 37.9
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 2.6e-06 56.6 207 30.9
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 2.6e-06 56.6 175 32.0
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.6e-06 56.6 184 31.5
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.6e-06 56.6 197 31.5
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 2.6e-06 56.6 144 35.4
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 2.6e-06 56.6 121 35.5
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.6e-06 56.6 127 34.6
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 3.3e-06 56.2 45 60.0
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 4.4e-06 55.8 187 32.1
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 4.4e-06 55.8 127 35.4
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 5.7e-06 55.5 208 30.8
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 5.7e-06 55.5 208 30.8
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 5.7e-06 55.5 208 30.8
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 5.7e-06 55.5 186 31.7
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.7e-06 55.5 186 30.6
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 7.4e-06 55.1 45 60.0
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 7.4e-06 55.1 45 60.0
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.4e-06 55.1 161 33.5
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 9.7e-06 54.7 113 33.6
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 9.7e-06 54.7 201 28.9
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 9.7e-06 54.7 107 33.6


User provided reference genes

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