Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.5e-214 749.2 365 100.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.0e-114 417.5 233 87.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.5e-113 412.9 231 87.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.1e-107 393.3 237 82.7
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.5e-81 307.4 217 65.0
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.5e-81 307.4 239 61.1
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 4.3e-81 305.8 229 63.3
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 5.3e-79 298.9 227 63.4
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 6.9e-79 298.5 229 60.3
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.5e-78 297.4 223 61.4
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.5e-78 297.4 231 61.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 5.0e-77 292.4 220 62.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 6.5e-77 292.0 230 59.6
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.9e-76 290.4 215 61.9
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.2e-75 287.7 235 57.4
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 3.6e-75 286.2 238 60.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.6e-75 286.2 225 59.1
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 6.1e-75 285.4 215 62.3
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 7.9e-75 285.0 209 64.6
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.4e-74 284.3 223 61.9
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.4e-74 284.3 225 59.1
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.3e-74 283.5 227 58.6
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.1e-73 281.2 219 61.6
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.1e-73 281.2 235 57.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-73 280.8 212 62.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.5e-73 280.8 212 62.3
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.5e-73 280.8 210 63.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 3.3e-73 279.6 219 61.2
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 5.7e-73 278.9 230 59.6
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 7.4e-73 278.5 211 62.1
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 7.4e-73 278.5 213 61.5
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.3e-72 277.7 252 54.8
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 4.8e-72 275.8 218 60.1
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.8e-72 275.8 236 58.5
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 6.3e-72 275.4 219 61.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 8.2e-72 275.0 218 60.1
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 8.2e-72 275.0 212 61.3
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.8e-71 273.9 205 61.5
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.4e-71 273.5 231 56.7
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.1e-71 273.1 214 62.1
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.1e-71 273.1 234 56.0
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.3e-71 272.3 209 61.2
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.1e-71 271.6 216 59.7
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 9.1e-71 271.6 223 59.2
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.2e-70 271.2 210 61.0
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.6e-70 270.8 205 62.9
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.5e-70 269.2 217 60.4
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.0e-69 268.1 214 59.8
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.7e-69 267.3 228 55.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.9e-69 266.5 198 60.6
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.8e-69 266.2 199 61.8
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.5e-69 265.4 221 56.1
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 6.5e-69 265.4 239 56.1
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.5e-69 265.4 217 56.7
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.1e-68 264.6 208 60.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.5e-68 263.5 216 59.3
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 3.2e-68 263.1 212 59.4
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-68 262.7 216 58.3
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 7.2e-68 261.9 197 63.5
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.4e-68 261.5 249 53.4
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 9.4e-68 261.5 209 55.5
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.6e-67 260.8 213 60.6
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.6e-67 260.8 205 59.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.6e-67 259.6 216 58.8
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.6e-67 259.6 216 58.8
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 6.1e-67 258.8 206 59.2
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 6.1e-67 258.8 204 60.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.0e-66 258.1 218 54.6
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.0e-66 258.1 217 59.9
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.4e-66 257.7 219 55.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-66 256.9 211 59.2
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.3e-66 256.9 211 56.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.3e-66 256.9 202 60.4
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.3e-66 256.9 217 55.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 3.0e-66 256.5 206 58.3
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.0e-66 256.1 224 54.9
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.7e-66 255.4 203 58.6
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.7e-66 255.4 192 60.4
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.7e-66 255.4 192 60.4
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 8.8e-66 255.0 212 57.1
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.1e-65 254.6 222 56.8
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.1e-65 254.6 205 57.1
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.0e-65 253.8 219 54.8
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.3e-65 253.1 213 57.3
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.4e-65 252.7 181 62.4
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 5.7e-65 252.3 230 54.3
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 9.7e-65 251.5 195 59.0
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.3e-64 251.1 212 56.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-64 251.1 206 57.8
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-64 251.1 234 54.7
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.3e-64 251.1 207 57.0
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.7e-64 250.8 206 58.7
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.8e-64 250.0 222 56.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.8e-64 250.0 193 59.6
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 4.8e-64 249.2 206 56.8
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-63 248.1 210 56.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-63 247.3 210 55.7
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 3.1e-63 246.5 235 53.2
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 4.1e-63 246.1 227 52.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 4.1e-63 246.1 211 55.0
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.3e-63 245.7 206 55.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.0e-63 245.4 195 57.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.0e-63 245.4 227 51.5
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 7.0e-63 245.4 211 56.9
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.2e-62 244.6 187 60.4
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.2e-62 244.6 208 55.3
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.7e-62 243.4 216 54.2
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.5e-62 243.0 192 56.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 4.5e-62 242.7 208 55.3
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 5.9e-62 242.3 210 54.8
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 7.7e-62 241.9 213 55.4
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.0e-61 241.5 296 44.3
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.0e-61 241.5 208 54.3
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.3e-61 241.1 205 55.6
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-61 240.4 232 51.3
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-61 240.4 232 51.3
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.9e-61 240.0 190 56.3
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.5e-60 237.7 216 50.9
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 9.4e-60 235.0 206 54.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.6e-59 234.2 190 55.3
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 3.6e-59 233.0 212 50.9
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.8e-58 230.7 205 53.7
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.0e-58 229.6 234 47.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 5.2e-58 229.2 193 56.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.4e-57 226.5 215 49.3
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.2e-56 223.8 209 51.7
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.8e-56 223.4 182 59.3
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.8e-56 222.6 206 53.4
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.0e-53 214.9 201 49.3
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.7e-53 214.2 218 47.7
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.0e-53 212.6 220 45.9
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.5e-53 212.2 214 49.1
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 5.5e-52 209.1 209 49.8
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 9.4e-52 208.4 196 49.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 5.2e-50 202.6 202 47.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.8e-50 202.2 155 60.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 6.8e-50 202.2 190 53.7
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.4e-49 199.5 204 46.6
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.8e-47 194.1 157 58.0
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.4e-47 193.7 204 45.1
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.6e-43 179.9 135 61.5
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 4.0e-42 176.4 220 45.5
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.5e-41 174.5 200 45.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.6e-41 173.7 213 46.5
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 3.4e-41 173.3 190 41.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.4e-39 167.2 138 55.1
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 9.2e-39 165.2 182 47.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.6e-35 154.5 220 36.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.8e-35 153.7 132 52.3
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-34 149.8 111 64.9
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 4.4e-33 146.4 105 63.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.1e-31 141.7 107 58.9
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 3.2e-31 140.2 188 40.4
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 9.2e-31 138.7 121 58.7
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 9.2e-31 138.7 120 58.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.2e-31 138.7 127 52.8
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.0e-30 137.5 117 53.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.7e-30 137.1 136 51.5
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.5e-30 136.7 95 66.3
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 3.1e-26 123.6 101 60.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 6.8e-26 122.5 176 40.9
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 8.9e-26 122.1 136 46.3
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-25 120.6 123 46.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 7.5e-25 119.0 126 44.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.4e-23 114.0 112 52.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.7e-22 110.5 107 48.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.5e-22 110.2 90 54.4
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 7.8e-22 109.0 128 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.7e-21 107.8 170 35.9
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-21 107.8 112 45.5
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 3.3e-20 103.6 170 35.3
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.6e-19 100.1 91 56.0
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 5.2e-18 96.3 84 53.6
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.3e-16 91.7 82 57.3
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-16 90.9 98 42.9
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-13 81.3 62 56.5
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 6.6e-13 79.3 90 42.2
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 1.6e-06 58.2 72 45.8


User provided reference genes

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