Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.4e-111 406.4 209 100.0
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 3.2e-68 262.3 152 87.5
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 3.2e-68 262.3 149 88.6
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.2e-67 260.4 151 86.8
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 7.0e-60 234.6 152 80.3
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 8.9e-55 217.6 144 75.7
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 4.9e-53 211.8 144 71.5
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 6.4e-53 211.5 145 72.4
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 9.2e-52 207.6 147 66.0
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 4.6e-51 205.3 130 74.6
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 4.6e-51 205.3 144 69.4
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 7.8e-51 204.5 150 71.3
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.3e-50 203.8 131 76.3
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.7e-50 203.4 149 67.8
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 6.6e-50 201.4 125 76.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 6.6e-50 201.4 126 74.6
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.1e-49 200.7 147 68.7
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 1.1e-49 200.7 144 70.8
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.9e-49 199.9 144 70.1
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.9e-49 199.9 123 79.7
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.9e-49 199.9 128 72.7
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 5.6e-49 198.4 149 65.8
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 5.6e-49 198.4 133 74.4
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 7.3e-49 198.0 147 66.7
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.2e-48 197.2 125 74.4
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.2e-48 197.2 125 74.4
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.6e-48 196.8 124 75.0
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.1e-48 196.4 121 76.0
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.8e-48 196.1 123 75.6
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 2.8e-48 196.1 125 73.6
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.8e-48 196.1 125 76.0
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 4.7e-48 195.3 121 76.9
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 4.7e-48 195.3 143 68.5
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.4e-47 193.7 121 75.2
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 4.0e-47 192.2 123 73.2
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.0e-47 192.2 144 70.1
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 4.0e-47 192.2 124 72.6
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 5.2e-47 191.8 144 68.1
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 5.2e-47 191.8 121 74.4
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 5.2e-47 191.8 126 74.6
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 6.8e-47 191.4 125 75.2
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 6.8e-47 191.4 125 70.4
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 8.9e-47 191.0 123 73.2
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 8.9e-47 191.0 126 74.6
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 1.2e-46 190.7 125 75.2
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.5e-46 190.3 125 69.6
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.5e-46 190.3 125 75.2
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.5e-46 190.3 125 70.4
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.0e-46 189.9 123 74.0
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 2.0e-46 189.9 123 74.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 4.4e-46 188.7 124 72.6
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 4.4e-46 188.7 123 69.9
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 4.4e-46 188.7 124 74.2
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 4.4e-46 188.7 144 66.7
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 5.8e-46 188.3 124 74.2
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 7.6e-46 188.0 127 71.7
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.7e-45 186.8 123 74.0
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 2.9e-45 186.0 123 74.8
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 2.9e-45 186.0 124 72.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 1.1e-44 184.1 145 65.5
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.1e-44 184.1 124 74.2
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 1.1e-44 184.1 123 74.0
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 1.9e-44 183.3 125 69.6
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 5.4e-44 181.8 124 72.6
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 7.1e-44 181.4 124 73.4
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 7.1e-44 181.4 124 73.4
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 7.1e-44 181.4 126 71.4
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 7.1e-44 181.4 124 72.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 9.2e-44 181.0 124 71.0
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 9.2e-44 181.0 124 73.4
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 9.2e-44 181.0 124 73.4
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.2e-43 180.6 143 64.3
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.6e-43 180.3 124 69.4
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 2.1e-43 179.9 125 71.2
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 3.5e-43 179.1 124 72.6
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.5e-43 179.1 123 72.4
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 7.8e-43 177.9 143 60.1
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 1.7e-42 176.8 123 72.4
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 6.6e-42 174.9 123 71.5
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 8.7e-42 174.5 123 71.5
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.1e-41 174.1 120 70.8
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.1e-41 174.1 142 63.4
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 3.3e-41 172.6 123 69.9
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 4.3e-41 172.2 131 65.6
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 7.3e-41 171.4 123 69.1
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 2.8e-40 169.5 119 69.7
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 4.8e-40 168.7 149 60.4
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 6.2e-40 168.3 112 72.3
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.1e-39 167.5 122 69.7
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.9e-39 164.9 122 69.7
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 2.0e-38 163.3 117 68.4
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.8e-38 161.8 124 64.5
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 7.6e-38 161.4 117 67.5
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 7.6e-38 161.4 144 60.4
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 9.9e-38 161.0 122 68.9
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 1.7e-37 160.2 119 68.9
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 3.8e-37 159.1 142 57.7
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 6.4e-37 158.3 124 62.9
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.4e-36 157.1 145 57.9
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 4.2e-36 155.6 125 59.2
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 4.2e-36 155.6 127 63.0
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 7.1e-36 154.8 123 64.2
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 3.5e-35 152.5 121 64.5
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 7.8e-35 151.4 128 60.9
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.9e-33 146.7 122 63.9
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 3.8e-29 132.5 126 52.4
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 6.0e-27 125.2 88 69.3
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.8e-26 123.6 122 54.1
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 2.3e-26 123.2 122 54.1
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 5.1e-26 122.1 109 51.4
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 1.9e-25 120.2 114 55.3
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 8.1e-24 114.8 76 73.7
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.5e-22 110.5 117 51.3
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 4.5e-22 109.0 118 50.0
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.3e-21 107.5 106 53.8
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.2e-21 106.7 114 58.8
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 1.8e-18 97.1 122 44.3
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 3.9e-18 95.9 81 54.3
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.7e-18 95.1 99 51.5
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.1e-17 94.4 89 59.6
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 2.5e-17 93.2 107 43.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 6.9e-15 85.1 124 41.9
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 2.3e-10 70.1 57 64.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.6e-08 63.9 49 69.4


User provided reference genes

Program Settings