Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.0e-72 276.6 133 100.0
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 1.7e-35 152.9 113 69.0
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 4.1e-29 131.7 143 57.3
CsaV3_2G032290 Cucumis sativus L. HOM05D008824 ORTHO05D003125 8.6e-19 97.4 86 59.3
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.9e-16 87.4 113 49.6
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.0e-11 73.9 116 45.7
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 2.3e-11 72.8 108 48.1
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 6.6e-11 71.2 104 48.1
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 8.6e-11 70.9 110 40.0
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.5e-10 70.1 119 45.4
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.3e-10 68.6 118 42.4
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 4.3e-10 68.6 136 37.5
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 9.5e-10 67.4 107 45.8
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 9.5e-10 67.4 107 45.8
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.0e-08 63.9 109 39.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.4e-08 63.5 119 38.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.4e-08 63.5 129 37.2
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.8e-08 63.2 135 40.7
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.8e-08 63.2 135 36.3
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.8e-08 63.2 135 36.3
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.8e-08 63.2 126 36.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.8e-08 63.2 128 38.3
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.3e-08 62.8 130 34.6
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.1e-08 62.4 115 37.4
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 3.1e-08 62.4 95 41.1
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.0e-08 62.0 134 38.1
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.0e-08 62.0 99 38.4
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 8.9e-08 60.8 126 34.9
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 8.9e-08 60.8 126 34.9
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.9e-08 60.8 117 38.5
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.2e-07 60.5 126 34.9
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.2e-07 60.5 92 39.1
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.2e-07 60.5 113 37.2
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-07 60.1 82 50.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.5e-07 60.1 138 39.1
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.5e-07 60.1 132 37.9
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-07 60.1 124 39.5
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.0e-07 59.7 134 39.6
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.0e-07 59.7 130 40.8
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 2.6e-07 59.3 114 38.6
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 2.6e-07 59.3 114 38.6
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.6e-07 59.3 126 40.5
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.4e-07 58.9 130 40.8
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.4e-07 58.9 127 37.8
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 4.4e-07 58.5 126 34.9
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 4.4e-07 58.5 148 35.8
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 5.8e-07 58.2 116 37.9
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.8e-07 58.2 130 40.8
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.8e-07 58.2 128 36.7
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 7.5e-07 57.8 76 40.8
arahy.Tifrunner.gnm1.ann1.75VKL2 Arachis hypogaea HOM05D013068 ORTHO05D003125 9.8e-07 57.4 155 36.8
arahy.Tifrunner.gnm1.ann1.NDRC00 Arachis hypogaea HOM05D013068 ORTHO05D003125 9.8e-07 57.4 155 36.8
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 9.8e-07 57.4 129 34.9
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 9.8e-07 57.4 133 35.3
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 9.8e-07 57.4 133 35.3
BolC2t06442H Brassica oleracea HOM05D008824 ORTHO05D003125 9.8e-07 57.4 113 38.9
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 9.8e-07 57.4 129 34.9
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.8e-07 57.4 135 37.8
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 9.8e-07 57.4 81 43.2
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 1.3e-06 57.0 124 34.7
CANSAT01G2013 Cannabis sativa HOM05D008824 ORTHO05D003125 1.3e-06 57.0 105 36.2
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-06 57.0 133 41.4
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 1.3e-06 57.0 117 34.2
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.3e-06 57.0 104 40.4
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 1.7e-06 56.6 127 33.9
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 1.7e-06 56.6 132 34.1
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 1.7e-06 56.6 87 44.8
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.7e-06 56.6 83 39.8
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.7e-06 56.6 127 33.1
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.7e-06 56.6 93 35.5
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-06 56.2 96 45.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 2.2e-06 56.2 142 33.1
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.9e-06 55.8 113 35.4
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.9e-06 55.8 114 36.8
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 3.7e-06 55.5 86 41.9
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.7e-06 55.5 96 38.5
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.7e-06 55.5 85 44.7
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.7e-06 55.5 107 35.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 3.7e-06 55.5 132 37.1
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.9e-06 55.1 76 42.1
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.9e-06 55.1 138 37.7
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 4.9e-06 55.1 102 37.3
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 4.9e-06 55.1 82 40.2
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.9e-06 55.1 107 35.5
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 6.4e-06 54.7 127 33.9
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 6.4e-06 54.7 71 42.3
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.4e-06 54.7 116 39.7
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.4e-06 54.7 116 39.7
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.4e-06 54.7 109 34.9
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 6.4e-06 54.7 116 37.1
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 8.3e-06 54.3 126 34.1
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 8.3e-06 54.3 128 33.6
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 8.3e-06 54.3 128 33.6
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.3e-06 54.3 116 37.1
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 8.3e-06 54.3 116 33.6


User provided reference genes

Program Settings